HsaINT0096512 @ hg19
Intron Retention
Gene
ENSG00000162337 | LRP5
Description
low density lipoprotein receptor-related protein 5 [Source:HGNC Symbol;Acc:6697]
Coordinates
chr11:68178904-68181480:+
Coord C1 exon
chr11:68178904-68179088
Coord A exon
chr11:68179089-68181156
Coord C2 exon
chr11:68181157-68181480
Length
2068 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
GCCCGTGTGTGTTCATGCAGGTC
3' ss Score
9.79
Exon sequences
Seq C1 exon
CTACATCTACTGGACCGAGTGGGGCGGCAAGCCGAGGATCGTGCGGGCCTTCATGGACGGGACCAACTGCATGACGCTGGTGGACAAGGTGGGCCGGGCCAACGACCTCACCATTGACTACGCTGACCAGCGCCTCTACTGGACCGACCTGGACACCAACATGATCGAGTCGTCCAACATGCTGG
Seq A exon
GTGAGGGCCGGGCTGGGGCCTTCTGGTCATGGAGGGCGGGGCAGCCGGGCGTTGGCCACCTCCCAGCCTCGCCGCACATACCCTGTGGCCTGCAAGTTCCCCAACCTGGCAGGAGCTGTGGCCACACCCACGACTGCCCAGCAGCCTCACCCTCTGCTGTGGGAGTTGTCCCCGTCCACCCCTGGGTGCCTTTGCTGCAGTTATGTCGGGAGAGGCTCTGGTGACAGCTGTTTCCTGTGCACCTGCTGGGCACTAGGTCCCAGCTAATCCCTGTGCCAGGACTCTAATTTCACCCTAACACACATGGTGGTTTTCATTGCTGGGGAAGCTGAGGCCTGAGCACATGACTTGCCTTAGGTCACATAGCTGGTGAGTTCAGGATCCCCCAGAGATACCAGGGCCAGCACTCGATCCCCACCCAGCCCTGAACCCCACCATGTGCTGGGATTGTGCTGGGAGTGTCCACACGCCCGGGACCCCAGGGCTGGTGCTCTCATCTCCTTTTTCCAGATCATGAGAATGAGGCTCAGGGAAGTTTGAAAAAAACCTATCCCAAGTCACACAGCAACAGGAGCAGGATTTGAACCCAGAAAAGGGGACCGCACACTCTGTTCTGCTAGAGTAGTTAGCTGTCCTGGGTGATATGGCAGGTGACAGGGGCAACTGTGCTTAACAAAGGAACCCCCATCCCCCCTGCCAAGTTGGGAGACTAGAAGGTCAGGGGCAGAAGCTCTGAAGGGCCAGGTGCAGTGGCTGACACCTCTAATCCCAGCACTTTGTGAGGCCAAGGCGGGCAGATGATTTGAGCCCAGGAGTTCAAGATCAGCCTGGGTAATGTAGTGAGACGCCATCTCTACAAAAAAATTTTTTAAAAATTAGCTGGGCATGGTGGTTCATGCCTGTAGTCCAAGCTACTTGGGAGGCTCAGGTGGGAGGATTGCTTGAGCCCAGGAGGTTGAGGTTGTGGTGAGCTGTGATCATGCCACTGCACTCCAGCCTGGGCAATAGAGTGAGACCGTCTCCAAAAAAAAAAAAAGAAGAAGAAAAAGAAGCTCTGAGGCTCCAAGTCCCCAGGCACCCCTTGGCTTGAGGGCAGACAAGGGAGGAGAGGGTCACCTGGGCAGCCCTGACTTTTGTCCCCTGGCAAAGGGACCTTCAGTGACCTTGGCCCTAGGAGAGCCTCTGAGCACGTCAGCCATGTCGAACCGCTCAGGAAGGGCAGCAAGAATTTGGCTTCTGACCTCTGCCTCTCCTACTCGCCATCTGCACTGGGTGTGGTTGTGCCCATTTTACAGATGAGGAGGCTGGGGCATCGACCAGCTGAATGCCTTGTCCCAGGTACTGCGTAGGCAGAGCTGGCAGTTGAACCCCGTGTCCTGGTTGTCGCTGGGGGTGGGCTGCACCCTGACTTGTGAGGCCAGTAGCAAGGTTTGCACGTGACTTCGTGACCGTCACCCAGCTCTGCAGCACATCCCGTGACCCAGCTCATCCAGGCCGCATGCAAACCTGTTGCCAGGCGAGAAACCAGTCACCGCACAGCTGTGGTTGCCTGAAATGATTAAGCTCATTAATCACCCCGGAGTGAGGACAGACTCAGATGAAAACCAGCAAAAGCCCTGGAAACTCATGTGACCCTGCCAATGAGGGCGGCCATGTGCATTGCAGCCTGGCCGTCACTCCTCGGTACGTGTTTTGGACTTAAACGCTCCGGATGTTTACTGAGTGCTTGATTAATAACATGGAAGGCCTGGTCTCATTGCTGTGGGAGTGAAGGATGCACAGCCAGGCCTGACATGATGAGAACAAGAACCTGGAGTCTCGCTGCCTGGGTGGTAATCCTGGCCCTGCCACTTAGCAACTGTGTGACTGTAGCCAGGTCACTTAATTTTGCTAGATCCTGCCTGCGCTTCAGTGGATCTTGCTGGTTTTCCAAGGTGGCCAAACACTTTAAGGCATTCATGTGGTCGCTAGGCTGCAGGGTTGAACCCTGGCTCACCCCGCAGGGCGCCGTGTGCTCTGTGGCCTGGCTGTGCCTTTGCTGACACCGTGCCCGTGTGTGTTCATGCAG
Seq C2 exon
GTCAGGAGCGGGTCGTGATTGCCGACGATCTCCCGCACCCGTTCGGTCTGACGCAGTACAGCGATTATATCTACTGGACAGACTGGAATCTGCACAGCATTGAGCGGGCCGACAAGACTAGCGGCCGGAACCGCACCCTCATCCAGGGCCACCTGGACTTCGTGATGGACATCCTGGTGTTCCACTCCTCCCGCCAGGATGGCCTCAATGACTGTATGCACAACAACGGGCAGTGTGGGCAGCTGTGCCTTGCCATCCCCGGCGGCCACCGCTGCGGCTGCGCCTCACACTACACCCTGGACCCCAGCAGCCGCAACTGCAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162337-LRP5:NM_002335:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=WD(100=65.1),PF0005812=Ldl_recept_b=PU(51.4=30.2)
A:
NA
C2:
PF0005812=Ldl_recept_b=PD(45.9=15.6),PF0005812=Ldl_recept_b=WD(100=37.6),PF146701=FXa_inhibition=WD(100=33.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)