BtaINT0087014 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005903 | LRP5
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N1K8]
Coordinates
chr29:46559669-46562237:+
Coord C1 exon
chr29:46559669-46559905
Coord A exon
chr29:46559906-46562126
Coord C2 exon
chr29:46562127-46562237
Length
2221 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
3' ss Seq
CGCAAGGCCCCTCCTTGCAGCCG
3' ss Score
5.66
Exon sequences
Seq C1 exon
AGCCTCCCACGTGCTCCCCCGACCAGTTCGCCTGCGCTACTGGGGAGATTGACTGCATCCCCGGGGCCTGGCGCTGTGACGGCTTCCCCGAGTGTGACGACCAGAGCGACGAGGAGGGCTGCCCAGTGTGCTCGGCCTCACAGTTCCCCTGTGCGCGGGGCCAGTGCGTGGACCTGAGGCTGCGCTGTGATGGCGAGGCCGACTGCCAGGACCGCTCGGATGAGGCGGACTGCGACG
Seq A exon
GTGAGGCCCCGCCCCCGCCCTCCCGGCCCCGCCCCAGCAAGGCTCCGCCCATCCCCTAGGGCACCCCCTCGCCCTCCTGGAGTTTGGGCTTTATCGGGCCGGGCCGAACCTGAGGAAGGTCACTGTAGAAGCTTTGCCAAGGCTCCTCACCTTGGGAAGGAAAAAATGTTAGTTTTAGGCCCCCTGAAGGCTCCTGGCGTCTGCCCTGCCAGTTTGGCATGAAGGTGGACTGTGAGAATCTATCTTGCCTTCCCTCATTCAGTCAAGAATTTTACAGAAATCCAAGACAAACGCATTAGTCAGCTTGCTTTCCATGGTTTACACCCTGGTTAATTCCCATCCCCAAAGGCAGTGCTGTCCTCCACCAGCGAGTCTGTGGGTTAATGCTTATTTGTGGGTGATTTCTAGCATCCCACTGAACCAGGAGTTACCAGAGAGATTTGTCTGGTCAGCCTGGGTCCACTCTGACCAGCAGGATCTTCCTTTAGACCGTGACAGTGAAACAAATGTCTGTGCTCCCTCTGAGTTTCTTTTATAAATGACCTTCTCCGTTGGTTCCTGCCACATACTGTCAGCACCACGGCCCCGTGTTGACTACTACTGAGCTAGCTGTTAATAGGTCTTTCTAGCTGCTACCCCCATAGCCACTGGGTCCTATACTTGGATAACTCAGATTTTATCTGTTCCCTGCCCACTCATGAAAAGCAACCATTCTGTGGAAGATGAAGGCCTGGGGTTCATTCCCGCAAGTGTTTCCGTAAAGCTGCAGTTGTAAAGTCTTTCCAGCTCACAGACCCTTTGAGAACTTGATAGAGACTAGACCAGGATTAGCACACTGTGACCTAAGGGTTAAATCCAGGCCACCACCTATTTTGGTGAATAAAGTTTTGGGTTCATGCTACATCACCTCAGTCATGTTCGACTCTTTGGGACCCCATGAACTGTAGCCCACCAGGCTCCTCCGTCCATGGGATTCTCCAGGCAAGAATACTGGAGTGGGTTGCCATGCCCTTCTCCAGGGGATCTTCCGACCTCGGGATCAAACTTCTGTCTCTTACGTCTCCTGCATTGCAGGCAGATTCTTTACCATCTGAGGCACCAGGGTAAGTTGGTATTCTTTACCAACTTAGCCACCTAAGTTTTATTGGGACAAAGCTAGGCTCATTCATTTACATATTGTCTGAGGCTGGTGTTGCATGAAAACAGCAGAGTTGAGTAGTTACTGTAGAGACATATCTGTCTCTTACAGGAGAGTTTTCTGAGTCCTGCCTTACACTTGGCCCCAGCTCAGTCTGGTGGCCAAGATCTCGGCGGGTGGCAGGAGCCCTGATTAGGAACCACTCCCTCCGTCCTCCCACTGTGAGAGTTTCTCCTGGTGGAAGGAAGCCCTGGGAGAACAGCAGGCCCTGGTGCAGGCTTTGGGTTCCACCCTCCGTTTCAGAAGCTTCCTCTCCTGCTTGGTGACCAGGAGATCTGCCCACTCATTGCACGGACAGGGTTCCTTGTCTCCAGTTTCGAGCGTGGGGTGCCTGGGCCGGGGCAGGTGGGGAGCTTAGACAGGAAGTACTGGGGGCAGGTGACCGGCGAGCCCCCAGGCAGCTCCCTTCCTCATGGGGCCGGGGCCCTTCCCAGGTCAGCAGGGAAGCAGCAGCAGCTGCAGTGCCCGGCCTTTCTCTTCCGTTTCCCCCGAAAGCCTGAGAGCTGCACTAGTTGCTTGCATGGCTAGCCTCTGCCTCTCCGGCTGAGCTCTGCACTCTCTTCCTGACCCCCGGAGCTCTGCGGGCGCATCAGCTGTCCCCTGTCCCGCCTGGTTAGGAGCCTGGCTCCTGTGGGCCATCCACTGACCCCATGACCTGGGAGACAGCCTGAGCTCAGGGGCTGTGGGACCTCTGGTGCTTTGCAAGCCTGACCCATGGTAGGATCCTGGTGAATAATTACCTCCCTGGGTCGTTGAGGTCTCTTCCCTGCCAGCCCGTCCCCAGCATTTCACAGGCCTTGAAAGGGGGGTCATCGAGGGGAGGGTGAAGGCTGGTTTGGCCGGGACGGTGTCCCGACCTGGTCCTTGCAGGGGTCCCTTTGCCTGCTCTGCGTTTGGACCCCAGGCCTCTGCTGCTGGGTCTGGGGTCGCGGGGCTGGGTGCACCTGTTGGTGGTCATCTGCTTAGTGCTCCTGGCTGCGTCATGCCCTCCAGCCTCTCTGAACGCAAGGCCCCTCCTTGCAG
Seq C2 exon
CCGTCTGCCTGCCCAACCAGTTCCGCTGTGCCAGCGGCCAGTGCGTCCTCATCAAACAGCAGTGTGATTCCTTTCCGGACTGCGTCGACGGCTCCGACGAACTCATGTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005903:ENSBTAT00000007756:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=48.8),PF0005713=Ldl_recept_a=WD(100=46.2),PF0005713=Ldl_recept_a=PU(0.1=0.0)
A:
NA
C2:
PF0005713=Ldl_recept_a=WD(100=97.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]