BtaINT0087016 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005903 | LRP5
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N1K8]
Coordinates
chr29:46563617-46564256:+
Coord C1 exon
chr29:46563617-46563853
Coord A exon
chr29:46563854-46564116
Coord C2 exon
chr29:46564117-46564256
Length
263 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CGCCGGCCCCCCTCCCACAGGCA
3' ss Score
11.04
Exon sequences
Seq C1 exon
AAATCACCAAGCTGCCCTCGGACGACGGCCCAGCCCACAGCAGCGCCATCGGGCCGGTCATTGGCATCATCCTGTCGCTCTTCATCATGGGCGGGGTCTACTTCGTGTGCCAGCGTGTGGTGTGCCAGCGCTACGCCGGTGCCAATGGGCCCTTCCCGCACGAGTACGTCAGCGGGACCCCCCACGTGCCCCTCAACTTCATCGCCCCCGGCGGCTCCCAGCACGGTCCCTTCACAG
Seq A exon
GTGAGGAGCCTGAGCCCCATGAGGGCCCTGGAGGAGGTGGAGAAGGGCGGTCAGGGCGGGCTGCGGGGCGAGGGGGTCAGAAATGCTCTTTGGACTTGACCTGAGCTCATCTGAGTTGCCCACTGGGGACAGTCGTCACGTGGGGCTTCTTTTTCTGAGCCTGGTTGGGTCTCCTGGGCAGAGGGGCTGGAGAAAGCACTCCGTGTCCGTGGGGCGCCCTGGCCCCTGACCAGGCCTCATGCCCGCCGGCCCCCCTCCCACAG
Seq C2 exon
GCATTTCGTGTGGCAAGTCCATGATGAGCTCCGTGAGCCTGATGGGCGGCCGGGCCGGGGTGCCCCTCTACGACCGGAACCACGTCACCGGGGCCTCGTCCAGCAGCTCGTCCAGCACCAAGGCTACACTGTATCCACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005903:ENSBTAT00000007756:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.277
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGGCATCATCCTGTCGCT
R:
GTGTAGCCTTGGTGCTGGAC
Band lengths:
308-571
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]