RnoINT0086695 @ rn6
Intron Retention
Gene
ENSRNOG00000015911 | Lrp5
Description
LDL receptor related protein 5 [Source:RGD Symbol;Acc:1309329]
Coordinates
chr1:218823554-218824530:-
Coord C1 exon
chr1:218824294-218824530
Coord A exon
chr1:218823694-218824293
Coord C2 exon
chr1:218823554-218823693
Length
600 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CACCTTGCCCTTCTCCACAGGCA
3' ss Score
11.26
Exon sequences
Seq C1 exon
AAATCAACAAGCCACCTTCTGATGACGTACCAGCCCACAGCAGCGCCATTGGGCCTGTCATTGGCATCATCCTGTCCCTCTTCGTCATGGGCGGGGTCTACTTTGTCTGCCAGCGTGTGATGTGCCAGCGTTACACAGGGGCCAGTGGTCCCTTTCCCCACGAGTATGTTGGTGGAACCCCTCATGTGCCTCTCAACTTCATAGCCCCAGGTGGCTCACAGCACGGTCCCTTCCCAG
Seq A exon
GTGAGGAGCCTGAAGCGTTCACTCTGTGTTGGAAGTGGTTTGGTTGAGTTGTCTGGGAAGAACCTGGAGGGCCGCCCGCAGAAATACGGTTTATAATTGCAAGTTCTCAGGGGCGACACTTTGCTTCAAATCCTGTCAGTAGCATGGTGTGCCCATATCTGTGTCTCGTGAGGGTGAAAGTGCCTGTTTGCTCTGGGGCCGTCATAGAGACTGTCCAAACCTCTGCATCTTTGGCCTCCTCTCCTGGCCCATTCTCACTAAGTCTCATCAGGTCTGCCACGTTCAGAGGTTGATGTGATCTGATTCTTTGTAGGGGCAGAGGGCAGGACTTGTCAGGGGCTGTGACAGCATCACTGTCCCAGCATTCTTGGGCTGCCTGGGTTCTGTGTGGTATGCTCTGCATTCAACCCCTACAGGGCTCTCCTCTCCAGTCTCTCCAAGAGTCACTTGGATAGCCTACACTGGTATAGCCAGAAACCCAGACCTGCTGGAGGTAGAGACAGTGTCCATTGAGACCCAGCTCCCTGAGTAGGAATTTCATGGGCATCAGGGCCCAAGATGGGCGTTTGTCACTCTGACCCACCTTGCCCTTCTCCACAG
Seq C2 exon
GCATCCCGTGCAGCAAGTCCATGATGAGTTCTGTGAGCCTGGTGGGGGGGCGGGGCAGCGTGCCCCTCTATGACCGGAATCACGTCACCGGGGCCTCATCCAGCAGTTCATCCAGCACAAAGGCCACACTCTATCCACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015911:ENSRNOT00000022213:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.383
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGATGACGTACCAGCCCA
R:
GGCCTTTGTGCTGGATGAACT
Band lengths:
346-946
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]