BtaINT0087377 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001686 | LRRC52
Description
Bos taurus leucine rich repeat containing 52 (LRRC52), mRNA. [Source:RefSeq mRNA;Acc:NM_001206099]
Coordinates
chr3:3425059-3446915:-
Coord C1 exon
chr3:3446294-3446915
Coord A exon
chr3:3425400-3446293
Coord C2 exon
chr3:3425059-3425399
Length
20894 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TGCTGTGTGTTTCCTCTTAGATG
3' ss Score
10.34
Exon sequences
Seq C1 exon
ATGTCCCTCGCTTCAGACCCTAGGCCGGGGTGGTTACTCTTTTCCTTCGGAATGGTACTGGTATCGGGGTCAAAGTGTCCAAATAATTGTCAATGTCAAGACCAAGAAGTGATCTGCACAGGGATCCAGTTAACTGAATACCCCTCTGATATACCCCTGAACACCCGGAGGCTGTACCTGAATGATAACAAGATCCGTTTCTTGCCAGCGATGAATCTAGGACTCCTCAGTGACCTTGTTTACTTGGACTGCCAGAAGAACAGGATTCAGGAGGTGATGGATTATACCTTTGTCGGGGTCTTCAGACTCATCTACCTTGACCTCAGCTTCAACAATCTAACCTTCATCTCCCCTTATAGTTTCTCCATGCTCAGCAACCTGCTGCAGCTGAATATCTCCAACAACCCTCATCTGTTATCACTTAACAAGTACACCTTTGCCAACACCAGCTCTTTGAGATACCTGGACCTCAGAAATACTGGCTTGCAGACCTTGGATGAAGCTGCCTTCCAAAACCTCATAACACTCCAGACCCTGTATCTGAGTGGAAACCCCTGGAAATGCAACTGCTTTTTCCTGGACTTCACCATCTACTTAATAGTGTCCCATCTGAACTATCCAG
Seq A exon
GTGAGGGCTTGATTGCGTGTGGGGATGAGGATATGATGGCATAGGAGGAACTGGTTCCGGAAAAGGTGAAGTCAAAAGGTGGTTAGTGCGGGAGAGAAATCTGGGTAAAACTGATTGAAAGCATTCTTATTGCTCTGCAGGATCCATCCTTGGGTTGACCGGAGAGGCAATAAGGATCAATAGAAAATGTTCTAGAATAGTTATCCAAAGAGCTGAGTTCTGCTCCCATACTCAGCCCTTACTACTCAGCTGCTGTTGGGGAAGTCTCGATTTCTCTGAGCCTCAGTTTCTTGATCCATAAAGTGGGGACAATAATATTACCAAACATAGAGAGTGTCCTTTCAATGTGAAATGATATGAGTGGAAATGATAATGTACTATAACTGCAAAATGACAAAGTAATACAAGGACACTGAATTCCCTTGGTAAATTATTTTAATCTGTTTAATTTGGTGACTGACTTTTCTAGGATCTAAAAGTAAATTCAGTCATTCCTAACCAGGAGAAAATCCAATGGTATGATGCATAGAAAGGAAAGATCAATAGAGATGGAGGAGGCACAGTTGAGCCACTGAGACATGAGTGAGAGGGGGAGGAGAAGAGAAGGCTTGGATATCTCCTTTGTGTTCAGATGCTAACATGCACGGAAGGTGAGAACAGCACGAATGAGTGCAGAATGGGCCACCAATGCCCAGTGTGTCAAGCAGAGAGATTCCGAACTCACAGGCAGACGCTCAAGTCTTACCTGGTAGAGTTCCAAGCCAGTTGCTGCCACTCTGTCCACTGTCCCCATGGCTCTGCCATGGTCCCTGGGGCACTCTGGTGCCTCATCCCTTCTTTTCAGTGGCTTTACTGTCCCATTCTCATCCTTCAATTCCCCCACACCACCAATATCACGTTGACCCAGGGAAGGCAGAGCTTTGGGTAAGTGTGAAATAATGAGCCCCTCACAGAAAGCTTGGAGCCACTGATGTAATTAAACTCGGTCAGAACCATGTCTTCTCTGCCTTCCCTGGGTGTGTGTTTTTGAAAATAATTTCATATACCAGCTTCACAAATGTCCTGCTGAAGTTTCCACCCTTAAGTCCAAGTGGCAATATTCTAGAAAGATTCCTGACCAAAATGCCAGGCTTTTAAGGGGCACTGGGAGAGAAGGAACTGGGTGATGACAGCAAGTAAAAAAAGCCTCCTAGCTTTCTAAGTGGGTCTGTCGTTAAATGTCTTCCAGGCAGGGGCTGTACTATGATGGGGCAAGTGATGCAAAATTGGGGCTCCCAGGATACAAAATTGAAGGTGGCACCAAGAAAAAGTATCTCCTTAAATTTTGTGCCTGAGGCACCTGGCCCTGCTGCCAGGTACTTCAACTCGAATTGTGTGTGTCACTCAGTCATGTCCAACTCTGCAACCCCATGGGGTGTAGCCTGCCAGGCTCCTCCGTCCATGGGATTCTCCAGGCAAGAATGCTGGAGTGGGTTCCATTTCCTTCTCCAGAAGATCCTCCTGACCCCAGGTTTCCTGCATTGCAGGCAGACCCTTTACCATCTAAGCCAACTCAAGTTAGAATCAATCGAAAGGAAGAAACTTTGTCAGACCATTTTCTTAACAGTACTAATCATAAAAGAATACAGGAGCAGTTTCTTGGGTCGCTTGCCTTGCCTCTCCAGAGATGGTGTCTTCTGCTTTTCTCAAGACTGGTGCTGTGGTGGTTTCTAGAAAGCTCTCTAAAAGAAGGTTAATATTAATCATTCTCATACATTAAATGTGGTTCCCAGATGGGATTCTCCCTGTCAATGTTTGTGTAACTAGCCTGTGGACCAGCATCATCTTCTCTTGCTCCCTCCCCACCATTCATACACATTTTTCTTGAGCAGAAATTGCCAATTTGCCAGGAGGACCCCCTGCTGAAAAGTGTGAAGGAGCTTGGCTCCTTCCCCAGTCCCAGAGCCTTCCACTTCACCTCCCAGGTAATCTCCCTTAATCCGAATTTTAGCTTTTAAAGTTGTATCTTCTCAGAATTTTCAGACTAACTACTTTGGACTCTTTGACTGAATTCCATCCAGGATTGGACAGGATTATAAACTGAATCTGTTTCACTACATGTTTTCAAAAACATCAGAAGCTGGTGTCTATCTTGTCAAGCTCATAAGCTTCTCATGAATGAAGAGTCTGTCTTTTGAGGTAGACAAATCTTTTCATCCATTGTCCAGTGGAAGTCCCCCACCCAACACACACACACACACACACACACACACACACGCACGCACGCACGCAAACTACAAATCTGCTCATCTCCCTCTGCTGTTTGGTTAGATCACTTCATGCAGAAATATAGTCCCATTGCCCCAATTCACTATTATTATCTCTTAAAGGTATCAATGAACCCCAAGCCAGGCATAGAACAATTTCGCTTTGTATCAGGTTTTGCAGCTACTGAAGTTTTTCACATGTGCAGTTTCATTTTCTTTACTTTGAGTTTCATACCAGCTCTTAGATTTTGTGCCCTAAGACTATGGAAAGAGGCTAGAGTAGGTATTTTTGACCCTATCCTATGGTTAATAAGATGGATTGGTTCACCCAAAGTCACACAGCAACTAAATGGCAGGAAAGTGGTTTGAACTTCCTGATTTCAAATTCAAGTCTTTTTCTATATGACTGCTATCTCTTAAGTCCTCAAATTATATAACTATGATCCAATAAGTCACTTTAGTAATAAATATAAGTCATGTCATAAGCATAGGGCCACAGCACCTATATTTCACCTTTATGTCTTGTCTACATTTGGAACTCACACAAGATCACTTTCATTGGATAATAAGCCCGAGCCATCATAGACTCATTATAATATGCCTGCACTTCCCTTCCAATCCAAGGTTTCACCCCAATCTACCCAAACTCTAAAAGAATAAACCCAACTTCAGTGTTTGCTCTCCTTTGCACCTTATTCAGTCTGGTTCTCCCTTCCCATGCATACACACATACACACACACACACAAACACATGTGCGAACACATACACACATGCACATATACAAACACAAAACTATATCTACACAAACATACATACATATATATACATACTCACACTCTCGACCACGTATTACATATGCATGACACACATACATGTGTAAAAATGCACAGATACACACCAAGACATGAACAAACACACACAGACACAAAGTTGAAAACACACGCAGTAGAATTCACGGAATGCTCCACTTGTCCTTTAGCCAGACCTCAACATAACGGAGACATTTATTTTACGTGACTCTCATACGATGACTCATTCCTCTGTTAGGTGAAAGTATCTTTGCTATTTACAAACACTCTAGTTGAACTCTCAACCTTCAGCCCACCTATTACACCACATTTTTCTATCAAAACGGTAATCTTTGACATGTTCTTGAATGGTATCACATCTCTTTCCCATGTGCCCAAGTTTCAGGATATAGGAAAATTTCTATGAAATGAGCTGAATAACCTGGTTGTTTATAAAGGAGAATCAAACTTAAAGATGGGTTTCATTTTAGACCCAGGGAGAATACCAAACCGTACTCCTGGAGATTTTGCCTGCAGTGCTGTATTGAGGTCAGTATGACAGCAGAATTATAGTATGTAGACCGTTTGAAGAGCATGGCAGTGAAGTAGGGATCTTCCATGCCACCACTCAGCTCATCCTTTCATTCATTTAAATATTTATTATGTCCCAAACAAGTGCTCATGGAGACAACTAGCCAAGAAGCCTGGGAGTATGTACAGAGACTCATGTGACTATGAGTCACCTGCACATATGTGTCCCACGGTGCAATGGGACACCAGAACTAAACTCACCGGACAGAGCAGGACAAAGAAGGCAGCATGTGCCTTTTGGGGTAGAACAAGCACTTGGGAAAGTCTCAGCTGTGGGTGGTGAAGGATGGCCACCATGCAGGCAGGAAAGCCCAGTGTTAAGAGCTCAGGTTCTAGAGCAAAACAGACCTGAATCATATTCCTAGCCCTGCCACTTAGTATCTGTAGGAGATCAGATAATTCATTTAACCTCTCTGCACTTCAATTTCCTCATCTTTCAGACAGGTCTAATAATAGACCCAACTGCCCAGGGATGGTGCAAGGATGAAATTAGAACATTTATGAACTTCCATTTAGCATTAAGACTGGCACAGCATAAACATTCAGTAAATGAATGGTAGGCAGTAAACATTCAATAAATGAATGGTAGGCAGATGTAGGAAAGGCGCAAGGAATGGAGAGAGCACCAGTTATCAGTCAGGTGGCCAATGGGGCAAGCAGTGGACTTCAGCAAGGCTTGGTGGTATTGGAGGACAGTGTGCCTTGTCCAGGAGACACGCCTGTACAGATGCATGTGGGCATATAAATAGGCTATGAGAAGGTGGGCAGCAGGTCTCAGGACACTCATCCCTGAGAAAATAGAAGGGAGGGAATCCTGGAGGGAGTTGGATATTGGATGAATTATGAATATAGGAATTCAGACCCTGGGGGGAAAAAAAATCTCAAATAAAGGCATGGTCTCAACTGGATCATGAGACTCAGGGCTGGACCAACATCAGTAAGGGGATTCTTCCTGAGTCATCTGAGTCTAGAACTGAAGTTCTACCTTAAAGACAAGCCAACTTCCAGGAACACATATGGACATGCAGGCATCTTTCGAGGGATGGAGTCGAGGTCAGTTCCAACCTCCAACGGGTAGACATGGCCCTGGGAGAAAGAAGTCACCTTCATGGTGTAATTTTGTCATCTGAAGAGTACTGAATAGAAGTTTTGTCCCAGGCTCTCCCTATCCACAGCCTACCATCAGGCTACCATTAGCCATTAGAGATGTATCCTTATGGATCCCCCAAAGTGCCCCAATCTTGAAGAGGGTTGTGAAAGATACATAAACTCCTGGGCAAATAATATAAGTACCCCTTGATGCCTTTGAACTGTGGTGCTGGAGAAGACTCCTGAAAGTCCCTTGGACATCAAGGAGATCAAACGAGTCAATCTTAAGGGAGATCAACCCTGAACATTCACTGGAAGGACTGATGCTAAAGATGAAACTCCAGTATTTTGGTCAACTCACCCACTCCAGCATTCTTACCTGGAGAATCCCACGGATGGAGGAGCCTGGGGGGCTACAGTCCATGGGGTCGCAAAGAGTCGGACACGACTGAGTGACTTCACTCACTCACTCACTCACATGTGAATAGACAACTCATTGGAAAAGTCCTTGATGCTGGGAAAGATTAAGGGCAGAAGGAAAAGAGGGCATCAGAGGATGACATGGCTGGATGGCATCACAGATGCAATGAACATGAACTTGGGCAAACTCCAGGAGATGGTAAAGGACAGGGAGGCCTGGCGTGTTGCAGTTCATGTGGTCACAAAGAGTCAGACACAACTGGACGACTGAACAATCTTTTATCAACTTTCATATCAGAGGAAAGAGTGATTTCATAGGAAATACAATTAACTAAGATTAACTCTGAAACAGTGGGGAACCCTGAAGGAAGCCAAGATCCAAAAAAGACATGGAGTGGTCTTAAAAGACATGAGGGTAATAACGTGTTCTCCCCCTATGTCATACTGCTGCTTGCCCCCTCAGAGGAACTGTAGAGGAGGTTGAATGTTTTATTCACCTTGCTTCATCACAAGGCTACAGCTAATAGGAGCATTGAAACTTTCCCTTACTGACCAGAGATTTGGTGCTGTTACCAAAAGTCTTCATTAAAGGAAACCCTCAATAATAGACTCACCAGATGCACTGGAAACTGTCCAGTTCTCAAAGAGTTCATGTATTCAGTTTCCAAAGACAAAAATCATAGCAGAAATAGAAGTGAGTTGAAGTGTGCTTGTTCCTCGGATGCTCTGGTCAATACAGAGTTAAAACAGATTCACAGATTGCATTTTCTTTTTGGCTCAAGTCAGCAAATAGGAAGACTAATTCCTGGCCAGAACTGTAATTTTCCAGTCATTAATGCTATTTGAAGGTGAGCGTGGAAATTGAGCTCTTCCCAGGATAGCGCTCCCCAGCAGGACAGAGTTGAATGCCTCTGAAGATGCTCTCAAAAACTCATGCAGCTCTAAGCTCCTGGACAGAACAAGTCTGGCTTCCTACATCCCTGCACCCTGCCTCCACATTGGTCTAGCGCTGTCCAACAAAACCTTCTGCAGCAGCAGAAATGGTCTAAATCTGTGCTGTCCAACACAGTATCCACTAGCCACATGTGGCGATTAAACTCTTGAAATAGGGTTAGTGGAACTGAGGACCAAATTTTTAATTTTATGTCATTTCAATTCATTTAAATAGCCATATTTATGACTGGTCAGGGAAGCCTTTAATATAAGATACTTAAGCTGGAACTTTATAATTTAGCCCCCTCTCAGGTAAGTGGCTGGAGAAGGCAATGGCACCCCACTCCAGTACTCTTCCTGGAAAATACCATGGACGGAGGAGCCTGGTAGGCTGCAATCCATGGGGTTGCTAAGAGTCCGACACGACTGAGCGGCTTCACTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACAGGGGAGCCTGGTGGGCTGCCGTCTCTTGGGTCGCACAGAGTCGGACGCGACTGAAGCGACTTAGCAGCAGCAGCAGGTAAGTGGTTATAGAGTCCAGTCCAGGATGGAGATCTTCTAACATCCAAGTTAAGTGTTTCCCCCATGCCATGATATTTCCTTACTATCAGGTACATCACTGTCCATTCAACTCTGAAACAGATATTGTATGTTTATTATATGCTTAACATTCTTTTTTTTTTTTTTATGTTGGGGTGCTTTATCACAGGGAAAGAAGTCATAAATCCTGTCTTTAATAAGACAAATCTAGGGATACAAGAGAGGGAAAATGCAGTTGAAAGCCAGGAGTTCTGATCTCAATCATGTCAATGTATGATTTGGGTGGCAAGTCATTTTCTCTCTGAGTCTCACTTGTCTCTGAAATAAGGAAACAGGAGTAGACATTCTATAAGACTCCTTCTAGTTGGACCTAAATAGAAATAAAAGATGCACTTAGATGGAGGAAGAGGAGAGCAGTGGTCAGCAGACAGGGTCCCAAATGGGCAAGTACACAATGGATTAGTGTTGAGGTACAGATGTTCCTAGATGAGTACTGTGGTCACACAATTAGGAAATGCAACCTGTAACTTCTGCATTCTCTCACCTCCTGTCTTAAACACCCTCTGCTGGCTAGAACAATGCCTCCACCCTCCAGGGACTCAGTGCCTTGAATTTTCCTCCCAGGCCTGGCCTGCTCAACCAGCAGTTCTCAAACGCCAATGAGCACAAGAAGCCCAGGCTCCCTGTCCAGAGATGATGACCCAGTTAGCTTGGGGCAGGGTCTATGAGAAGCCCAATGACAATGACCTGGATTCTAGCTCTACAGTGGCTGCTTCAACTAGTGAATAAATTGATTTACACTGAGATGTTGGGGGCTTCCCTGATGGCTCAGATAATAAAGAGTCTGCCTGCAATGCAGAAGACCCAGGTTCAATCCCTGGATTGGGAAGATCCTGTGGAGAAGGAAATGGCAACCCACTGCAGTATTCTTGCCTGGAAAATGCCATGGATGAGGAGCCTGGGGGGCTACAGTCAATGGGGTCATAAAGAGTCAGACGTGACTGGGCGACTAACACACTGGATGTGATGCTGGTGGCTAATAATGTTTTGATATGTCTCCCTCAAGGGGCATTTGCAATGTGACAGGGAATAAACAGAACCAGAGAGAACACAGAAAGGGACAGGCTACTAGCATAGACATGGGGGTAGTTTCAGGACAGAAGGTCTGTCTGTGTCAGCCCTTAAATTACAGTCCTTGGACCATCCTGCTTAGTCCAATGGTGGGGTCCACAAGTCAAAAAAAGGACTCTAGGCAGGAGTGCCACCAAGGCAGGGGGATAAAGCCACCTGGGGACATCTGCAGGAAGCAGATGGGCTGGGTCATGTACTGCTTCAGGTCTAAGCCATTTAGAGGGCATTTTGAACAGAGAACATCTTAGTTTCATCCTGAGGCTATTTTATCCTGTATTCCAGGCTGCTGTAATAGGATAATGGCTCCATTTCAACCCACCAAGTACAAAGTCATCTACAACTGTGCCAAAACTTAGATTTCCAGAATGAATTCAGGTCTTCACACCCTTCCACTATTAATGCTAACCCATCTCCTCCATCAAGGAGATTGCAATAAAGACCAGACGCCAAAAGCGGGAACAGCTGGGCAGCAGACATTGCCAAGGCTGTCAACTGCTCTGCTAGCGTGTCTCTCCCACCTCACCCTGGCCCTGTGGCTCCCTTCTGCTGAGAGCCGGAGAAGCAGCCTCCCGAGGGCAATGAAGCCGCTGAGAGGGCTGCAACTGGGGCAGTGATCCCCAAACGATCCAGAAAACTTGAGAAGGGATGGAGGGGGCAAGCTTGTTCAGTTTGGGAAGGAACTTGTGTGATTCTCATACACTCTCTAACTCAGCCCAGTTGGAATCCCTGAGAGTAGGTGATCTAAAGCCCCCTCAAACTCAGAAATGCCAGACCGCTATGCATGGCCCCTCTGGTCACCCAATACCATTCAGGCCCCTGGAAGGAGGCAGTGCAAGGCCGCCAAAGCAGCCAACCTCAGTTTCTTCACCTCTAGAAATGAAGAATTCCCCAACCTGAAAGAAATCCAACAAAATGTGGATGCGGCTAGAAAAGAGAAACGGGCGGTTGGCCATCTAGGGCCTTTGAATGATTTTCTAGGGAACATGCAATGTATCCTGAGAAGTTTTGGAAGGCAGGAAAGATGAATACAGAGCTAGGAGGCTTCTGTGGGCATTCAGACAAGAGAGGCTGGCAGTCTACAGCAGAGGCATGAATTGAAGAGGTACAGATAGGCCAGAAGAAACTGTTCAGAAGGCAGACACAACAGGACCTGGGACTGAACTAGACCTTCTCAGAGTCCCCTGCACTCCCTTTGTGACTCCAGGCACAATTCTAAGTAATTAACAGGTCTGTGTTCTTTAACATTTGTATTCTCTGATAGACAGGAAGGTCTACAAGATCCAAGAGCAGGTCTGAATCTTCAGACACAAAGAAAGTTCTCAAAAAATATTTGAGTGAATAAAAAAGTCAATGAGATGTGGAAAATAAAGGAAAGGAAAAATCAAGTGTAATTCCCAAGGCTTTGGCTTGGACAGCTGTGGGGGCTCCACTGAGAGAAGAAAGTAGTAAAGGGGCTTGGGGAGAAGCCAAGTCCTGTCTTGAATGTGTTGAGCGGGAGCTCTTTGTGAGACAGGAGGCTTTTGGATGTTTTGACCTGAAATTCAGAATAGAAGATAAAATATATGTTTGTAAATCATCAGCTCACTGGTGATCATGAAAACCAAACAAATGATGCTTAGCATGAGAGGATCACAGGGACTGCAAGGAGATCCAACCAGTCCATTCTGAAGGAGATCAGCCCTGGGATTTCTTTGGAGGGAATGATGCTGAAGCTGAAACTCCTACTTTGGCCACCTCATGCAAAGAGTTGACTCATTGGGAAAGACTCTGATGCTGGGAGGGATTGGGGGCAGGAGGAGACGGGGACGACAGAGGATGAGATGGCTGGATGGCATCACTGACTCAATGCACGTGAGTCTGAGTGAACTCTGGGAGTTGGTGATGGACAGGGAGGCCTGGCGTGCTGCAATTCATGGGATCGCAGAGAGTTGGACACGACTGAGCGACCGAACTGAACTGAACATATCAAAGGATAAATTAAGAAGTGCAGAAAACTGAATAAAGTGAGGGGATCGGCAAAGGAAACATGACACAGAGTGTGGGCTTTCTAAACAAAGACAAGAGCAAGTGCAAAGACCCTAGGGTGGAATAAGTTCGATGTAGTAGAAGGTGAGTATGGCTGAAGAGGAGTGGAGCCAAGGTAAGAGATGAGGTTAAAAATCAAAGGCCAGATCACATAGGACCTGGAGGTCATGGAGAAGCTTTCGATTTTATTCCAAATGTGACAGGAAGTTATGAAAGGGTTTTAAGTGGAGAAGAGACACGATCTATGATGTACAGCTGCCTCCCAGTGCTAGATGGAGAGCTGGGAAAGCGGGGACCTGAGTTAAGAGGCTGCCTCAGTTTTCAGGCAGCAGGCAACAGTGGCTTGGCCCCAGGTAATGGTCCAGAGAAGGTTAGAATCGGGGTATACTGTGAAGGTCAGACTAACAGGGCTGGCTCATGGCTTGAATTATGGGATGTGAGAGAGGCAGCAAGGACTCCCAAGTCTCTGCCTGGGCAACTGGTGAATGGTGTTGCCCTTCCACCACTGAGCTTTTCTAAATTGCCTCTTACCCATGAGGACAATAACTGTCCACTATCTGAGTTTTTCCAAGAAGATGGGTAGTTATTCACAAGGTCCAGCTCTAGGCCAAACTGAGAGCCAACTTTGTTTGGTTTACAAATTAGCTTCCCAGAACTGCCTGGTACCATCCCCAGATCTGATATGCAGTTGGCTCCTCTCCCCCCATCATAACCTGCTACAGAAAGTCAGTAGCAGGCGTTCCGCATGGGAGGGCTTAAGTCTTTGGCTTCTTTTCCAGAGGACTTTACACTTTAAGCCTTATTTTATCAGTGAAGTGAAGCTCCTGCTGACAGAATTCTGGGCACTGAGAAGCATCTGAGAAATGTCATGAAGAAAAGGGGTCTTTCTACCTGTAAACTGTGCTCATCTACAACTGCTCATACAAAAGACCAGTTCTGTAGTCTAAGCAACTTTAAAGCACAGGAATAATCAGGCTGAACTTGATAGACTTCAAGGTTTGTTCCTGTAGTGTTCCAATGGTCTATGAATCAGGCTTAAACCTTACCAAAATATGAACTCTTCATGCAAGGGGAAAAATTGTTATAAGAACTGTATTGCCCAAGCCCAAATTATCCAAAGCCAAGGATGCTTTAGACCAGGAGTCAGCACACACTTTCTACCTATGGCTGATTCCTATTGATTGACAGAAAACAACAAAATTCTGTAAAGCAATTACCCTTCAATTAAAAAAATTTAAAAAAAAGGACAAGTAAATATTTTAAGCTTTGTGGGTCTTTGTTGTGACTACTCTGTCTCTGTAGCATAAAAGCAGCCATAGAAACTACATTAATGAATGGTCATGGCTGTGTTCCAATAAAACTTTATTTATCAATACAAAAACATGCCACAGGATGGATTTGGCCCACAGATTATAGTTTGCTAAAGCCTGGCTTCCATCAAGGGAAGACATTTGGGTGATGAGAGAAAGGAGCTCTAGGGAGGCAAAAGTAGGAGCCAATGTCAGGACTAGAAATACTCACAGGACCATGCATGAGGGTCTAAGAAGGGGCCCTGTTGGCCAGTTGACTTTGGTTGTGCTGGGCTGCATATGGTGCAATCCAGGTTCCCCTCTAGGGAGTCTTCTCTGAGCCATTCATAGTATGCTGCTGCTGCTTAATCACTTCAGTCATGTCCAACTCCGTGCAGCTCTGTGGACTGCCACCTGCCAGGCTCCTCTGTCCATGGATTCTCCAAGCAAGAGTACTAGAATGGGTTGCCACGCCCTCTTCCTGGGCATCTTCCAGACTCAGGGATCAAACCCAGGTCTCCTGCATTGCACGCAGATTCTTTACTGCTGAGCCACCAGGGAAGCCCCATTCATAGTACGGCAGAATATAATAGTGTTCCCTTCAAATTCCATCAGAAACAAGTCCTGCACAGCAAAGCCAAAAACATGAGTTTTAAAGAACTGCTGTATGAGAATCCAGATGAGCTATTTCAAATCCTTAAAGATGATGCTGTTAAAGTGTTCCACTCAATATGCCAGCAAATTTGGAAAACTCAGCAGTGGCCACAGGACTAGAAAAGGTCACTTTTTATTCCAATCCCAAAGAAGGCAATGCCAAAGAATGCTCAAACTACTGCACAATTGCACTCATTTCAGATGCTAGCAATATAATGCTCAAAATTCTCCAAGCTAGGCTTCAACAGTATGTGAACTGAGAACTTCCAGATGTTCAAGCTGGATTTAGAAAAGGAAGAGGAATCAGAGATCAAATTGCCAACATCTGCTGGATCATAGAAAAAGCAAGAGAGTTCCAGAAAAGCATCCACCTGTGCTTCATTGACTATGCTAAAGCCTTTGAATTGTGTGGATCACAACAAACTGTGGAAAATTCTTCAAGAGATGGGAATACCAGACCATCTTACCTGCCTCCTAAGAAATCTGTATGGAGGTCAAGAAGCAACAGTTAGAACTGGACATGGAACAATGGACTGGTTCCAAACTGGGAGAGGAGTACATCAAGGCTGTATATTGTCACCTTGCTTATTTAACCTACATGCAGAGTACATCATGCAAAATGCTGGACTGGTTGAAGTACAAGCTGAAATCAAGATTGCAGGGAGAAATATCAATAACCTCAGATATTTAGATGACACCACCCTTATGGCAGAAAGTGAAGAGGAACTAGAGAGCCCCCTGATGAAAGTGAAAGAGGAGAGTGAAAAAGCCAGCTTAAAACTCAGCTTTGAAAAACGAAGATCATGACATCTGGTCCCATCACTTCATGGTGTATAAATGGGTAAACAATGGAAACAGTGACAGACTTTATTTTCTTGGGCTCCAAAATCACTGGGATGGTGATTGCAGCTATGAAATTAAAAGACGCTTGTTCCTTGGAAGAAAAGCTATGACAAACCTAGTTCAGTTCAGTTCAGTCGCTCAGTCATGTCCGACTCTTTGCAACAGTGTATTAAAAAGCAGAGGCATTACTTTACAGGCAAAGGTCTGTATAGTCAAAGAGATGGTTTTTCCCATATGGATGGATGGATGGATGTGAGAGTTAGACCATAAGGAAAGCTGAGTCCTGAATAATTGATGTTTTTGAACTGTGATGTTGAAGAAGACTCTTGAGAGTCCCTTGGACTGCAAGGAGATCAAACCAGTCAATCCTAAGGGAAATCAGTCCTGAATATTCACTGGAAGGACTGATGCTAAAGTTGAAGCTCTAGTACTTTGGCTGCCTGATATGAAAAACTGATTCATTGGAAAAGACCCTGATATTGGGAAAAGTTGAAGGCAGGAAAAGAAGGGGACGACAGAGGATGAGATGGGTGGATGGCATCTTGAGTTGATGGACATGAGTTTGAGCAAGCTCCAGGAGTTGGTGATGAACAGGGCAGCCTGGCATGCTGCAGTCCATGGGATCACAAAGAGTCAGACACAACTGAGCAACTGAACTGAACTGTATGAGATTAGGCCAATAATCCACACATTTTCTCCTATATGTATTCAACAGATGTTTATCAAGGCTCTATTGTGTGCTGCTGCTGCTAAGTCCCTTCAGTCGTGTCCAACTCTGTGCGACCCCATAAACAGCAGCCTACCAGGCTGCCCCGTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGATTGCCATTTCCTTCTCCAGTGCATAAAAGTGAAAAGTGAAAGTGAAGTCGCTCGGTCATGTCTGACTCTTCGAGACCCCATGGACTGCAGCCTACCAGGCTCCTCCATCCATGGGATTTTCCAGGCAAGAATGCTGGAGTGGGGTGCCATTGCACTAGGGATATACAGGTGAACAAATAGGATCTCTGCTCTCAAACAATTCTCAAGCAGTGATCGAAACAATAGCTACCTTTTGATATCATGCCTGCAGCCCTTGTATCCTCACCCCCATCTCCATGTGCACTTACCCTCATCTCCTTCTCCACTCTCAGAAGACAGTTCAAGGCTTACCCTTCATTTTGTCCTGGAGACCATCTGTTCCTGCCTCCTCCAAGACTTCACATCCCTTAGCTCACTGAATTCTCCCTAAACTCTCACAAGGTAAGCAGGGATTGGTATTAGCCTAGTGTAGAATAGTCCGAGATGGTACGAGGTTAGCTGCCCATCTATGGCCTTCTATCACCCCAAGGTCTCTTTCCTCCCATTAAGCCTTATGTCAATAACACTGCCCCAAGGGACATTAATAACAAAAAATATTTAATCCTCTCAACAAACATACTTTGAGCTCTGGTGTGTGTTAAGCAGTACTCTAGATGTTGGGGACACAATAGTGAACACAAATCCATGTCTTCATGGAGTTCATAATCTAGCAGACAGAAGCAGACAGATATCCACTTCCTCAATAAATACATAATTTAGCTGGACGAAAAAAAAAAAAAAAAAGACAAAGTACTGAACATCCAATGATATTCAGGCAAGCTAGGGCCTAATAAGGAGAAATGGGGGAACTGGGCCTTTCCCTAGGTTCCAGGTGGAAATTTTTACCACAAAGTGCTTAGACTGATAGAAACTGGCATTTGTTCTCCAAGGGGCAGTTGCAGTGTAACTGAAGTCTGCAAATTGTATCCTCTCCCATTACATGGCCGTCAGCTGGAGGCTGGCCTTCTCCCCTTAGCCCAGGCAGTTCCTAAGCAAGACTGTCCAGGGAACTCAAAGCAGCCTGCTCATCTGGAGAGCCATGCAGACTGCAGAACTGTGGTCACTTTTGTGGATTAAGAAAAAGAGCAGTTCCTCATAAAGCCACCAGGTTCAAGCTGGTTTTCTGAAGGAAGGCTTCCTCAGTTGCTATGCTACCAGCTGTGGTTCTGGGTCCCTGAAACTTTTCCCTTCATGCGTTGATTTTGGCAGACAGGTTTTCCACTTGTGAGCAATATGCCACATGAGGAACTAAAGAAGTGTGTGGTTTATGTTTCCTTAGGAACTATCTGCAGGGAGAATTTAAACATTAATGATACCTGTAATTGTACCTAGGCACTGTACTGGGGCAAATGCTCTGCACCTATGAAGTGGAGCTGAGGAAGGGATAATATGGGGCTTAACTGCCTGTTTGTAATATGAATGAAAGCCCTGGGATTGTGCAGTGCACAACATATACAACAGTGCCATGGCAGCCTTTTCTCAGAGGCAAGGAGATCAAGAAAGCCAGAGAAGGAGTAATTGATGAACAACTTATTCATCCTGTAGCTTGGGAATAATTAAAACTACTTAGTGGAGCACTTGCCTGGTGTCTCAAAAGGTAAAGAATCTGCCTGCAATGTGGGGGACCCAAGCTTGATCCCTGGATTGGGAAGATCCCCTGGAGAAAGGAATGGCAACGCATTCCAGTATTCTTGCCTGCAGAATTTCATGGACAGAGGAGCCTGGGAGGGTACAATTCATAAAGTCGCAAAAAGTCAGACACGACTGAGCAACTAACACACACACCCAGTGGGGTGCTCAAGAGTAGAGTTTAATTTCGTGAAGCACCTTATATGATGCCTAGAACATATAAGACACTCCAAGATGAGCAGATAGGTCCATAAACCCTAAAGTCATCATACTAGACTAGAAGAATGCATGACTAACAAGCTAAAGAAGAGATGAACCAATAAGGACCTATTGTGTAGCATATGGAACTTACCCTGATGTTACCTAACAGCCTGAATGAGAGGGGAGTTTGGGGGAGAATGGATACATGTGTATGTCTGGCTGAGTCCCTTTGCTGTTCACCTGAAATTGTCACAATGTTGTTAATTGGCTATCCCCCAATACAAAGTGAAAAATTTTTTTAAGAAGAGAGAGATGAAATAATAGAGAGCTAGGATCATTTAAAAAGTGGGAGAAATGGAAAACAATAGTTAATCCAAATATATCAGTCTAACATTAAATGTTAATGGGCTGATTAAAATACAGTTTACTAGACTGAATGAAAAACAAAGCCCAGCTGCATCCGGCTTACTAAACGTACCTTAAATATAGGAACACAGAAAGATTAAAAGTAAAATGATGGGAAAAGATATGCAATACAAACACTAACCAAAAGAAAAGGGTAAATCTACCAGAAAGAACTAACAGTTATATATGTATTTAAGAACATTGCTTCAAAATATGTAAGCAAAACTTAACAGAACTATTTGCAGAAGTAGACAAGTGCACAACCATAACTGGTGATTTTAACATACTTCCCAGTAACTGCTGCTGCTGCTGCTAAGTTGCTTCAGTCGTGTCCAACTCTGTGTGACCCCAAAGAGGGCAGCCCACTAGGCTCCTCTGTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGCTGCCATTTCCTTCTCCAATGCATGAAAGTGAAAGTGAAGTCGCTTAGTCGTGTCGGACTCCTAGCGACACCATAGACTGCAGCCTACCAGGCTCCTCCGTCCATGGGATTTCCCAGGCAAGAGTACTGGAGTGGGGTGCCATCGCCTTCTCCATCCCAGTAACTAGCAGACGACAAGTAGGCTAATAGTAGCTGAGACAATAAAGTTAACAAAAAGCCAAAAAAGATGAAAAGTCAATAAAGATGTAGACAATCTGTATAAAAGCACACTCATTGGCATACATAGAACAATGTATTCAACAAAGACAATACATTTTTCAGTGCACATGCAAAAATTACTAAAACTGACTCTGTTATAAAGAAAATTCTTAATAAACTTCAAAGGACTGAAATCAGAAAAATATGCCTCTGACTACAGTAGAACTGAACTGGAATTGAATAATGAAAGCAGTGCTAGAAAATCCCCAAATATTAAAAATCAAGTAATTCAAGGAATAATAGCTCTTATTAACAAGAATGATAATGATCAGACATGGATTATGCCTTCAGGAGCTAAAAGTCTGTCTTGTAGGAGAGAAAAGATGCTTTTCGCAGGACCTTCATAGTGGTCCAGTGGTTAAGACTTCACTTGCAGGGGTTATAGTTTTGGCCCCTGGTCAGGGAGCTAAGATCCCACATTCCTGTGGCCAAAAATCCAAAGCATGAAGCAGAAGCAATACTGTGACAAGTTCAATAAAGACTTTAAAAGTGGTCACATCAAAAAAATCTGTTTAAATATATGCTTTTTCAAATTTTTTTTTTTTTGATGCTTTGCTTTTCTAGCAAATAACCACCAAGTAAGACAGAACGTGATAGGTGCAGTAAGAATGATGCTAAGAAATGCAACAGATGAGCCCACAGTGGGAACAATCACAATATATCCTCTGAACTGGGAGGATGAAGTGGCTGGGGAAGGGTTCCTGGAAGTAGATGCATTTACATTAGACCTTGAAGGACAGGAAGGACTTGATGATGCAAAAATTGGAGGAAGAGATATTTGATGCGAAAAGGGCAGTGTAACAAAGCTAGCTGTAGGTAAGGGGGAGAGGTAACCAAGGAGCAAAGAGAGTTTAATTTGACTAGAATAAAGGGTGAGTTACGGGGAGAACTGAGAAGTAAGGTGGGAATGGTAGAACGGGGCAACGCTGAGGGCTCTGAACACCAGGCGGTCTGGATGTTATCCTGAGCCCTGGGGGAAGTCAGACAGGGGTTTTGAACCAGAGTGTGACTGGCAAGAGCCAAGCTTGCAGAAGGGGAAATCTGGCAGGAGTGTGTGCAGCGGTCCAGAGCTGGGGAGCTGGCTATGGTGGAGACAGACGTGCTGGGAGGTGAGGAGCGCTCACACCTTGGCGGTGACAGGTAATGAAGAGGGGAGAGAGAATGCAGCAGTAGAGAAACCCTCTCCACAGAGCCACCCACATCCCTCACTTAAAAGCAGCCTAACAATGCATTAAAATCGCTGCCTAATTGCTCCTTTCAAGGTAATGCTCCAAAATGGGGAAATAACGCATTTAATGTTTAGTCTCATATCTGCCGCCCAAGCCCTGATTTGAAAGCCTAATCTTTTTAAAAATAGAATGAGATAAACCCCTCTGCACCCACCATTGGGCACACTCCAGACCCTCAGAGTCCCATGTTCTCCTTTCTCATATACATCTTTCTTTGTATATTCCCACATGGTGTCTCTGGCAGCTTAGGCAGGTGATCTAAGCCCTGTCTTGCTAGAATTCCTGAAGATTGCTGGAGTCTTCCCTCACCTCACCAGCCTCTGCTTGGGCCTCCTGGAAAAGCACCAGAGGTCCTTGAACCAGGCTGACTAGAGAGAGGTCTTGAGACATAACTGCGTTCCTGACCCTTTACAGCACCCTGAGATGGAAGCCCAAGGGCCCTTTCCTCTCCAGTTGGCCTGGGTCACCCACAGAGCCTCTGTCTCACACTCATTCTAGAGAGGGGCTTCTTCCTCTCCTTTCCTCTGTAATCTTTGCAAACAGTCAATGTGGCAGCCCCATGCTGGCTTCCTCCTCCTGTGACTAAAACCTCAACCAACAGCGAGTCCTCAGTAGCATTACAAACATCAGGCCATCTTCCTGAAAGTAACCAACAAGTTCACTGTAGGTGCACTGACCAGGAACCAGGGTGCAGGCAATGGTGTCCAGTTTGGAGAGGACCTAATGGTCAGCCTGGACAGCTCATTCCGGTCACCCAGAACCAGCTGCCTCCCAGTAAGCTCACCTCTGTATTCCTTTCCCTATTTCTCCTGCCTCTAGCTCTAGTCCAAACTGATTTCCCTCATTTCCTTGGTCACCAAGGAAATCAGTGCCTTTACATAGCCTGGGCTTCCCTTGTGGCTCAGCTGGTAAAGAATCTGCCTGCAATGCAGGAGACCTGGGTTTGATCCCTGAGTTGGGAAGATCCCCTGGAGAAGAGAAAGGCTACCCACTCCAGTATTCTGGCCTGGAGAATTCCATGGACTATATAGTCCATGGGGTCCCAAAAAGTCAGATACAACTGAGCAACTTTCACTACTACCACTACATAGCCTGGAGTTCCTACCCTGTTGTAGGGGAAGCTTCTCCCCGCATTAGTCTCTCTCTGACTCCTACTTCTGTGAAACAAGCTCAGATGGCTCAGTCCAGGTTTTCTGTCTCCTGTCCCCTGCTGAGATCCTGCAGTTTATCCAGAACCTTCAGGTTAGGAAACTTTTCTGAGTCTCAGTTTCCTGATGTGAAAAACAAGGATGAAAATGTGTCAACATTCTTGTAAGAATTAAATGAGATAGCATTTACATATCACTTAGCATGTAGACAGAACTTGGTAAATATCAGCTGCTACTATGACTCTGATCATAATTGTCTTAAGCCCTAATCTCAGCCCTGAGTGGAAACTCATTTATCTAATGCTTGCTGGATATTTTCACCTGGACACTGCACACAGGCACCTCAGCATCAGCATGGCAAAATATATGGAGCTAGAGAAATGCAGGGCTGACAACAGAGCTCTGAGCAGTCTGTGCAGCTCTTGTGTACAGTGTACTGTGTGCACTGCTGTGTACAGTAGCTCACCTGCTCACCTGTGCCAGTTAAATCCTCTTTATTACCCTGAGAATAGATGTTCTTCTTTATCAGTTCAGTTCAGTTGCTCAGTCGTGTCCAACTCTTTGCAACCCCATGGACTGCAGCACTCCAGGCTTCCCTGTTCATTACCAACTCCTGGAGCTTACTCAAACTCATGTCCATTGTGTCAGTGATCCCATCCAACCATCTCATTCTCTGTCTCCTCCAGCCTTCAATCTTTCCCAGCATCAGGGTCTTTTCTAATGAGTCAGCTCTTCACATCAGTTGGTCAAAGGATTGGAGTTTCAGCTTTAGCATCAGTCCTTCCAATGAATATTCAGGACTGATCTCCTTTAGGATTGACTGGTTGGATCTCCCTGCCATCCAAGGGAATCTTCAAGAGTCTTCTCCAACACCATAGCTCAAAAGCATCAATTCTTCAGCGCTCAGCTTTCTTTAGAGTCCAACTCTCACATCCATACATGACTACTGGAAAAACCATAGCTTTGACTACAAGGACCTTTGTATGCAAAGTAATGTTTCTGCTTTTCAATGTGCTGTCTAGGTTGGTCATAACTTTTCTTCCAAGGAGCAAGCGTCTTTTAATTTCATGGATACAGTTATTCTTTATAGGATGAGGCAATGGGATTCCAAGACAGTATCAGACATCCTGCTGAAGTTTCCAAAATTAGTGACAGCGGGTTTGAATTCTAGTCTGTCTGGCTCCATGACCCACTTTTCCTTCTATTATATACTGAAGTCCACAGTGCTTGGTGTGGGGAGGTGCTCAGAGAAGGATCCAGGCAGCTGAGTCAGCCGCTATAAAGGACTGAGACTCATGTAAATCATGAGTGATGCCAACAGCATCACAGAAGCAGAACTGCTTCCCGTATTGGCTGTCCCTTTGCCCTGAGCTCGTCCCTGATTTCTCCAGGTTGAGGGTGTAGAGAACACACAGTAGGCATTTCCAGAGAATCCTGTCCCTCCTAAGTGGGGTGTGATGACCTTGAGTGGCCTTAGTGATCCCTGGCTGGGCTCAGGCACAGGAGAAGGGAAAGGGACAAGGTGGAGGGGAAGGTGGGGGTAAGATGAGGAAGGGGAGCAAGAGATGCCAAACACTGATGGAGCTCTGTGGAGTGTCCACACTCCATGACCATCTTGCTTAAGTTTCCAAACTCCCAGCTCCTTCTGTGCTCTCCCATTCCTTGAAGAGCCTTAAAAAGCAAACATCATTTTTAGGACGTGATGTGAACACAGCTAGAAGTGAAGTTGCTCAGTCATGTCCGACTCTTTGCGATCCCATGGACTGTAGCCTACCAGGCTCCTCCGTCCATGGAATTTTCCAGGCAAGAGTACTGGAGTGAGTTGCCTGAATGCAGCTAAGCCTGGGGCAAAAAGCAGTCCACGTGCAGTCTCAAACCTTACTATGCCCAGAGATCACCTGGAGATCTTGTTAAGATGCAGATTCTGAGTCAAGGAGGCCTGGGTGTGCTGCCTGAGATTCCACATTTCTCACGGGGTCCCTGTCATGCCGGTACTGCTGGCCCTCAGACCACGCTTTGAGTAGCCGGTGTCCATGCCATCACTCCAGGTCCCCGTTGGCCTCACAAGCCTAGGAGTTCTGTTTCAGCACTCTGCCTGCTGTGTGTTTCCTCTTAG
Seq C2 exon
ATGAACAAAATGCCACTTGTGTGGAGCCCACAGAGCTGGCAGGATGGCCCATCACGAAGGTGGGGAACCCGCTCCGGTATATGTGCATCACGAACCTAGATCTCCAGGACTACATCTTCCTGCTGCTCATCAGCTTCTGCATCTTCTGCGCGGGCACCGTGGCCGCCTGGCTGACCGGCGTGTGTGCCGTGCTCTACCAGAACGCCTGCCGCAAGTCGAGCGAGGACGAGGTGGAGGAGGAGGAGGCGGAGAACGAGGACGAGCAGAGGGTGGAAGTCAGCAGGCGGATTTTTCATAGCAGGGTGGACTCGGGCCATGATGGGTTCCCTCAGCTGATTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001686:ENSBTAT00000002199:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.115
Domain overlap (PFAM):
C1:
PF0146213=LRRNT=WD(100=13.5),PF127992=LRR_4=WD(100=19.2),PF138551=LRR_8=WD(100=29.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]