MmuINT0093123 @ mm9
Intron Retention
Gene
ENSMUSG00000040485 | Lrrc52
Description
leucine rich repeat containing 52 [Source:MGI Symbol;Acc:MGI:1924118]
Coordinates
chr1:169375806-169396911:-
Coord C1 exon
chr1:169396224-169396911
Coord A exon
chr1:169376255-169396223
Coord C2 exon
chr1:169375806-169376254
Length
19969 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TGCTGTGTTTCTCTTCACAGATG
3' ss Score
12.6
Exon sequences
Seq C1 exon
AGATCAGAAGGACAGCTTGTACCCGCCCTCAGGAAGGTAGAAGGAGGGGAACCTTGGCTTCTTACTATGTCCCTTGCTTCAGGCCCTAGCTCCAAGTTGTTACTCTTTTCTCTTGGAATGGGGTTGGTATCAGGGTCCAAGTGTCCAAACAAGTGTGTGTGTCAAGACCAAGAAGTAGCCTGCATAGATTTGCACCTAACGGAATACCCAGCTGATATTCCTCTGAACACCCGGAGACTATACCTGAACAATAACAAAATCACTAGTTTACCAGCTTTGCAGCTGGGATTCCTCAGTGACCTCGTTTACTTGGACTGTCAGAACAACCGGATTCGAGAGGTGATGGATTATACCTTCATCGGGATCTTCAGACTCATCTACCTTGACCTCAGCTCCAACAACCTAACTTCCATCTCCCCTTTCAGCTTCTCAGTGCTCACCAACCTGGTGCGGCTGAACATTTCACACAACCCTCACCTGTTGTATCTTGACAAATACGTCTTTGCCAACACCACGTCTTTGAGGTACCTGGACCTCAGAAACACCGGATTGCACATCATCGACCATAATGGCTTCCACCACCTGGTGGTGCTCCAGACTCTGTACCTAAGTGGGAACCCCTGGATATGCAACTGCTCCTTCCTGGACTTCACCATCCACTTATTAGTGTCCCATATGGACCACCCAG
Seq A exon
GTAAGGGGTTGATTGGCAGTGGGTGCCATGCCATGGGAGGGACTGGTTTCTGAGAGGGGTAGTCAAAAGATGATCGGGATGGAGGGAAAGCTGTGTGAGATGGTTAAAAAGTACCGTCACTGTTTGGCCCGGCCCCCTCCTTGGGTTGACTGGAGAGGCAATAATGCTTAATAGCAATAGTTCTAGAATGAGAATTCAGAACTCAAACATGTCACCTACCACTCCTGTGCCTTTAGAAAAATCTCATTTCTCTGCACCTGTTTTCCATTCCATAAAACCGGTACATATTACATAATTTGCAGAATTGTAGCCAACAAAATGTGTATGTAAATGATACAAAATGTGTACTGTAATTGTAAAGTTACAAAGTAATTCAAGGGCACTGGGCTCCCCTGGGTAAACTGTGTTAATCTGATTAATGCCGTGACTGAATTTTTCCAGGGTCTAAAATAAATTCAGTCCTTCACAGGTGAGGGAGAATCCAACAGGGCTCAGGGAATGTTCCACGGGTGTGGCAGGGGTGGGGTGCACAGGAGCCTCGGGGACAGCAAAAGACAGAGGACAGAAGGAAAGCCTTTGATAGACTTGTTTCAAAATGCTGAGCTCACAGGAAAGTGCCAAGCTGGGAGAGTCCGGTGTTATAGACTTACCTGGGGAGAGTTCCAAGCTAGGTGCTGCCACTGAGGCAACCCTCTCTGCAGTGGTTCCTTTAGTACCCCAGTGTGTCACATCCCCATCCCAGGGACTCTGTTGTCTCCTTCAACCCCAGGTAAGTCAGAGCTTCAGAGAAATGAGACCCCTTACAGAAAGCCTGGGGCCACTGGTACTGTCCCTGGGACATGGCGATTCCTAGCCAAGAACGGGCCTGCAGAACGGAGAGTCATCATTCCTCCAGAGCTCCGGGGTGATCGTGTCCTAAAAGGCCTTCCAGGCAGGAAGCCCACTGGAGTGAAGCAAGCCAGGATTTCCAGACCAGATTTAAGGAGGCACTGAGAATAAGCCCTCAGAGTAAGTGCCTCCTTAACTTTTGTGCCCTGGGCATCTGCCAAAAATCTCATCCTAAGTTGTTAGAATAACAAAAAAGGAACCATAACTTTGTCAGAGATCTCAGTAGCACTAAGACTGAAGACAGGAGCGGTGGCCCTAAGTAGCTTCCTTCCCATCTTCTCTAAGATGGTTCTACAGAGTTCTCTCCCAGAGAGTCAACTGCCCTGCATTGAATGTAGTTCCTAAATGTGATTATTCCTGCCAGCTCACATCGTATCTGGTGCAAAGATATCACCTTTTCCTGCCCATCCCCACAGACATACACACATTACACATTTTTATTGCTCAGATGTGTTTTAATTAGCATTTGTTGCTTCCTATAATATGTTACATTCACTCCCCATTATGTCTCTTATCCCACTCCTTTCCTACTCATTTCTCTTCTTTCATGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGAGAGAGAGAGAGATCAATGAGTTTAATTGAGCATAGGCAAGGTGTTATTTATAGAAACATGGGCAACTTAGCATTGGCTCCATCACTGAAGAAAATGGCTTCCCCTTCCTCAGCAGCCACTGACTGCCAGAAGCTCCTCAGGAAGGGGAAAACCTTATGAGCCCCTCCCCCATCTCCACCTCAGGAAGGGGAAGACCTTATGAGCCCCTCCCCCATCTCCACCACAGAATGCAGACAGACCCAACTTGTGCTGGTCTTCTATGATCCACACACATCATTCTTGAGCAATGGCCACCAGGTTGCCAGGGCAACCTTCTCCCCTACCTGACTATGGCAATTTACCTTCTACCCTGGCTTCTAAGCCTACCATGCAGTTCACCAAGCTTTCCTGCAATTTTCCTTAATCAAATTTCTGCTTTTACAGTTGTGTCTTCTCAGAATTTTCAGGCTGACTCCTTTGGACTGCTTGACTCTTTCAATTCTACCCATAATTGAACAAGATTATAAGGCAGGTCTTTTTCACTGCATGTTTTCAAAGACAGCAGAAGGCATAACTGTCTTGTCAAGCTCAGAAACCCCTCATAGATAAAGGAGTCACAGCTTTCCTCCACTGGCCAGTGGGACCCACAACTACTGATTGGGCCCTGCTGCTTGTCCCTGTTGTCCAGAGGGTTAGAAGAGCCTCAGAGGCCACTTCCAGAAGTGCGATCCCACTGTTCCTAGTCACTGCTGGTATCTCAGAGGACAAGGATAGGTCACGGCCAGATAAATCTCTGTGATTTATCCTCACAGGTCTCCATAGGCTGGCTGGGCCAAAATCACACCACTAATACACATTTAAAAAATCAGTTTCAAATTGAGGTCTGAGCTATGCAGTTTAGGGCCAGTTGGCAAAAAAACTGAGAAAATCCAGTCATTTGGGCTCGGAGTTTTGAAGATTCCATGATCTGCTTCTAGACCTAAAGCAAAGCAATGAGGACCCATAGCAGAAGATGCTGCTGAAGGGAATGTGGTCCCAACATCCCCTTCAAGGACATGTAGCCAGCTGCACACGTTCCTAGTCCCTCCTCTTAAAGGTTCCTCAACCGACTAATAGCTACATGGAGTTAATAGAACGTTAACGTTTTTCCACAGACCTTCGGGAAACATTTTAGCCCCACACTATAGCAAGGTCTTTATGAGACTGTATTATCTTTTAAATCTGAAAATCATAAAACTATCATCTTGTATCAGGTTAGTTAAATGTAACTAAAGTAGTTTTATTTCTTATCTGTCTACTCCTTAGAACTCATAAAAGATTGTTTACTTTGATTACACAGGCACTATCAAAATTTAATTGCAATACTCTATTACCTACCCAGATTTCTCATAGTCTATCCAAACTCCAAAAGGAGAATTCTACTCTAGTGCTGGACCTCTTCGGATCTCATTCAATCTCATATTCATTCTCTCCCTTCTCCTTACCTTTCTCCTCTTCCTCTTCCTCCCTTTCACACACACACACACACAAGCATGCATGCATGCAAACACATAAAAATCACATGAACAAACAAGCACAAAGGTGGGTAGAGCCATATACATATATACATACCTGCCTATAAATTACATCTACATAACAGGTATCCACGAAAACATACACCAAACTGAACACACAATAAAAATGTATTATATGCCTCTCACCTTTAGCTAAATTTAATGCAAAATAAGCACTATTTCAATCGACTCTCCTGTAATTATTCTACAGGGTAGACATACCTTGGCTTATACATGAACATTCTTGCTGAACTCTACAAACTCTCTTACTTATATCACATTTGCTGTCAAAATGGTGAACTTGACATGTTCTAGAACGGGACTCACATTTCTCTCCCCAGATAGCCACAGTTCAGGATATAGGAAGAGATCAATGACACTAGAAGAGTAGCCTTATTGTAAAGGGGAATCCAGTTTGCACGTAGGTTCCTTTGAGGTAAGAAGGTACTACCCTTCAGCACGAGTGTGGTCCCTGTATTGCAGTATTAAGGGCAGGCAGTATGGTGGTGAATGTTGATCTCTATGTTCCTTATGAAACGAGAAGTGAGGGGCTGGAAAAGTGGCTTGGTAGGTAAGAGCATTTGTTCTTGTGGAGGACCTGGGTTCAGTTTTCTAGTTCCCCACACCACTGTCTATAACTGCAATGCCACAGGATCTGACACCCTCTTGATCTCAGCAGGCACTGTGTGCATGTGTTGTACTTATAATACATGCAGGCAAACCGCCCACCCATACACAAAAAATAAAAATATTTTTAAAAAAATCAGTGAAGCAACAGATTTCCATTTAGCTCATCTCTTCATCCCTCCATTGCCAAACAATTGCCAATGGGTATAACTAACCCAGGCTCTGAGACCTTGTACGGAGATTCACATGACACTAGGAGAACAGCACCATCATTATGTGCCTAAGGTCTCTGGGACACAGCAGAGCTAAATAAAACTGGAGCCAGTATCTGCCTAGACATCACCCTTGGCTCTAAGTGATGGGACAGCCACCATGCAGACAGCAGATCCCAGAGCTGAAAGTTCAGTTTCTCAAGAGAAATAGACATGTTATGATCCTAGCCTGCCACTTACTATCTATAGGATATCAGATAAGTCATTTAACCTCTCTGAACTTTGATTTCTTCATCTTTAAGACATAGATAATAATAGATCCAACCTACATAGGGCTGTCATAATGATGAACCAAGAACATTCATGAAGTGCTATTAGCATTAAGCTTGACACTTCATAAGCATTCTGTAAACAAATGGTTGGTAGATGTAAGAGGAATGTACAGAACTGTAGAGACGATGTCAGCCAAACGGTTCCTTGAAGAAGAGGTGGGTTTTAGGAAGTCTCGCACACAGAATACTGTCTAGGAAACAGGAAGACCACAGAGATATAGACAGGGCATGCATAGTATTTGGAAAGGTGATCATTACGACTTTGTACTTTAATCCATGAGGAAAGAGATAAGGGGATTCCTACAAGGAGTTGGATATTAGGTAAATTGAGAGCACAAAGTTCCAGACCCTGAAAAGCCAAACTCAAAGGCCAAAATCAAGACCTGGTTACTTATCAGTGAGTTATGAGACTCAGAGCTGGATCAGCAACACCAAGGTAGTAGCTGTGCCTGCATCACTGAGACTGGGTCTTAAAGTTCAATCCAAAGAAAATGCCACTTCCAGAGGCAGGATGTGGATGTACACAGTTTTCTAGGCAAAAAGGTAAAGTTAGCCCAACAGAGGAGTGGTGGCACAGACTTGTGATTTGCAAGTGCTGAGCAAAGCTCTTCTCCATTTCTCCCCAGCTACTGCCTACTACTGCGCTGAAATTAGACATGGGATATTTGTCTTAGTCAGGGTTTCTATTCCTGCACAAGCATCATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTCAGCTTACACTTCCATACTGCTGTTCATCACCAAGGAAGTCAGGACTGGAACTCAAGCAGGTCAGAAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTCTTTACTGGCTTGCTTCCCCTGAATTGCTCAGCCTGCTTTCTTACAGAACCAAGACTACCAGCCCAGAGATGGTCCCACCCACAAGGGGCCTTTCCCCCTTGATCACTAATTGAGGAAATGCCTTACAGTTGGACCTCATGGAGACATTTCCTCAACTGAAGCTCCTTTCTCTATGATAACTCCAGCTGTGTCAAGTTGACACAAAACTAGCCAGTACAATATTCATGCCCCCAATGCTGTGACCTTGAAAAGGTCCCTGTGAGACTGCTAACTTCCTGAGGAGAATATGTAGCCCTAAGCCATTATCAGTTCTCATACCAGAGGAAGGGGTAAATTATTGTACTCTCTAATTAGCTAAAGTGAATTCTGCAACAGTGGAAAACCTTGAAGGAAGATGAGGTCCTGAAAGAAAAGGGAACGGACTCAAGAAAGGGCATGTGGGTATGTTCTTCTCCTACCCCATCCTGAGCTCAAGGGCCCCTCCCCCACTGAAAGGGAGGCTAACAGGAAACCGAAATGTTTTGTTCACCTCAATTCATCTTAATGTTATACAAAACAGGAATATTGAAACTCTCCCAAATGAACAAGATGCTTGGCACTATTATCAAAATTATTAAACAAAATCATACAACGGCACTCTAAGCAGATGCATGAAAGTATTCAGTCTGATACAGTTCGCTTTCCAAATGCAGAGGATAGCAGAAATGGAAGTGTGTTGTGATATGCCAGATGCCGGGTGCCCTGCTGAGCTCTGGTGAGCACAGGGTTAAAACAGACGCAAGCATTGTTCCTTTTTAGCCCAGGTCAGCAAGTAGGTGAACTAATTCCTGGCCGGATGCTGTAATTTTCCACTCATTAGTGATATCATCGGAAGGTGAGAGTGGCTACTGAGTTCTTCCCAGGATATTTATTTTCCTTAGTGGGACAGTGTTAATATTTCTAGGATGTTCTCCAAAAAGTCACTGAGCCCCAAGCTCCTGGTAGCTATACTGGCTCCCAGTTAACCCCCAAAGTCTGGCCCAAAGCAGCCAGCAGAAGTTTCTGCAGCACTGTGAACACCTTAGATGTGATGTCCAGTATAGAAGCCATTGGCTGTATGTGACTATTGAGCTCTTGAAATTTGGAGGACCACTAAACTGCATTTCTAACTGTTATTTATTTTAGCCCATTTAAATAGCCCCACGCGGGATTGTGGCTCTTGTGCTGGCAAGCCATTTAACACAGAGCCTTAAGCTGAATCTGTTTTTATGTTAGTTTGTGTTAGACGGGGTTATTGGGTTGTTTGGTCGTTTAGTTGGTTGGTTGGTATTTGGTTTTGGTTTGGAGTTTCGTTTTGTTTTGTTTTGCTTTTGCTTTGATAAGATACCTGAGACAATAACATAAAGAAAAACATGGTTATTTGGGCTCATGTTTCCAAGATTTAAGTCCACAGTTGGCTGTCTCCATGGTTTCTAGGCTTAGAGCAGAAAGATAAAGGAGGAAGTGACCTACTTCCTATGATGACACCCCACTTTTTAGTTTCAACCACCTCCCAAGAATGGTCTCAAACTATGAATTCATCAGTGGATTAACCCATTGGTTAGGTCAGAGCATCCACGATTCAATCAGCTCCCAAAGGACCCCCATCTGAACATTATATTAGTGATCAAGCCTTCAAAATGAGTCTGGGGGTGGGGTGGGGGACATTTCATACCGAAATTATAGCAAATGTCCTCACAGGTGACTACTGGACCTGGCCCAGCATGGATATATACCGCCACCCAAGTCCAGGATTCTTCTCCATTTTTATACTCTTTTCTTACTCTTGGGCACATCCACTTATCTGACTCTAAAACACTTACTATACTGTTCTCTGTGCAAAATATATGAAGATGGTTGTAACACAGAGAAGTTCTAATTCCTGTTAAATACGGTCAGCCAGGCATAGGAGAGACATAATATAGACTGAAAAGTCAGAAAGCCCTGCCCTGGTGTAGTAACACCATTGAGTGACTTAGAATTAGAGAGCTACTTCCTCACTTTGAAACTTGCTTTTCTTGTTTTTTGTTTTTTTGTTTTTTGGGGTTTTTTTTTAGGATATGTTTATTATGTATACATTGTTCTGTCTGCATATATGCCTGGAGGCCAGAAGTGAGCACCAGATCTCATTACAGATGGTTGTGAGCCACCATGAGGTTGCTAGGAACTGAACTCAGGACCTCAGGAAGAACAGTGCTCTTCACCTCTGAGCCAACTCTCCAGCCCCATTTTTCTTGTTTTTAAAGTAGGAGAACAGAACTTGAAATTCTCAAAGACCCTTTTTTTCTCAAAGACTGCAGATCTAAATAGAAAGATAAGACACTCGTGATAGAAGAGGAGATCGATGCTCAACAGAAAGGATCTTGAGTAAACAAGTGCATGGTGGGTAAAAGGGAGATGGAGGTATTCCTGGTACAGATGGCTACAACCATGGGAGGAAGGGAAAGGAATAAGTAGGAAGCCCCTGATTCTGGTGCCCTTCTATTCCCCATGTTAGGCTCCATCAACTCTTCTGCTACAGGGTAGTCAGCACCCCAGGCTTTCCTCCCAGGCCTGACACCCCAAGCAGAGGCCTTAAACTCTAATGAGCACTAAAACCCCACTCCTGGGATTCTGAGTCATGGACAGGCACTTCTCAGACAACCTAAGGCAGGCAGCATCCTGTGTTCCAGAGCTTCTGGGGATGTTCTCGCTGAAAAACAAGTTAATTCACCCTGAGATGCTAATGGATAATAATGTTTTGAAATGTCTCCCTCATGGGGCATTTGCAGTTTGACAGGAAACCATCGGAAATCAAGGATTCAGAAAGTGACTGGCTACCAGAGATAGGAATGGGACATGTTTAGGTCCCCTTGTGTCAACTCTTAAATTGTAGTCCTTAGGCAGTTCTAATTGAGCCCAGTGGTGAGGACCAAAAGTCAAGGAGGAATCTGGGCAAGGGTGACACAGAGGTGGGTACACTAGGCAACCGAGGGACATCTGCAGGAACAGATGGTTTGGGCCATGTGATGCTTCAGGTCCAAGTCATTGTGAGGGCATTTTGAACAGAGAACATCTTAGTTTCATTCGGTGGCTATTTCATCCTGTATCCAGGCAGCTATAATAGGATAGTGGCCCCATTTCAACACACCGAGTACAAAGTCATCCTCAGCTGTGCCAAAACTTAGATTTGCAGAATGAATTCAGGTCTTGCACCATTTCACTATAAATGTTAACCCAGCTGCAAGCTCCTCCATCAGAGAAATTGAAATCAAGACTGGAGGCAGGCAGAGGTGGGGAGAGGAGCTGAGAGAAAATGAGATGCTTCAAACATTGTCAACTGCTCTTCCAGTCTGGCTGTCAGATCTTATAAAAACATTCCCTGGCCTTGACACTAGAAGATCGTCTTTCTGAGATCAGTGAAGGGGCATAAAGGTAAATGACTAATCCTCCCCCCTCCCCAAAAAAAGGGTGGCCAGCCAGGTGATTCTGATAGGCTCCAGTACTCTACCCTTACTCAACCCAAATGGGATCCCTGAGGGTAAGTTGTCTCAAGGTCAAGCAGGAAAACACCATAGCTCTCCACGTGACTTCTCAAACTACCTAGCAAACTCAGGCTTTTGGAATGTGGCAGTAAAAGGCTACCCAGAACAGCCAACCTGAGTTCCCCCATCTGGACAGATAAGGAGCATGCTGGCAGAATCTAGGATGATGGATGCAACTAGAAATCGAGACAAGGGTCCTTTAGGGATGGATAACTATCTGAGGACCATGCTGTGTGTGGTGGCTTGAATATGCTTGGCTAAAGGAGTCACACTCTTAGACGGTGTGGCCTTGTTGGAGGACATGTGTCACTGTGAAGGTGGATTTTGAGAACCTCTTTCTAGCTGCCTGGATGCCTAGTCTTCTCCTGTTTGCCTTTGGAACAAGATGTAGAACTCTCAGCCCCTACAGAACCTGCCTGGATGGTGCCATGATTCTTGCCATGATAATAGACTGAGCCTCAGAAGTAAGCCAGCCCCAATTAAATGTTGTCCTTCATAAGAGTTGACTTGGTCATGGCGTCTCTTCGCAGCAATGGAAATCCTAACTAAGACACTGCGTATCATAAGCCCTGGAGAGCAGGCAAGCCTGGAGACAGAGTTAGGAATTCCGCTCCTAAAGACAACCAGGAGGCAGAGAACAGAAGCTGAGAGCAGTGGTGGGGATAGAGGTGTGGAGACGTACGTAGGATAGGAGAGTTTGGAAGAGAGAAACAGGACCTAGGACTGAACTGGTCTGCTCATGGCTCCTTATACTTCCTGTTAGGCAAAACTGTACGTGATAAATTTATATTAATTTAACTTCTTTCTTAATATCCTGGGAACTCTATGATAGCATTCTGCATCTTTAGGAAGTAGCACAAAGTCTGACAAAGAGAAAGTCCCATTAAATGAGTGCATGAAATTGGAGAAATAAAGAGAAAGGGGGAAGTGAAGAGTAACTTCTAATGTTTAGCTTGGACAACTGTGAGAAATTCATTGAGCTAAACACTTGCCGGGTCATCTTCCCATTACTAGAACAAAATACCTAATATTTCTGACTCATCAGGAGAATGTGGCTGCTGGCTCACAGTTGGGAAGATTCAGTCCAGAATCAGTGGGCCCCAATGTTTTAGTCCTGTGATGAGATAGCACATCATGGTGGTGATGCGGTTATTTTCAGGACAATAGGAATTTTTGGTCCAGAGAGGTGTGGCCCAGGAATTGAAGGTGCCAGCCACTCGATGGTCACTACAAGCCAACCTGAGACAATGGCTCTCAGTTAATTGTCTCACAGTCCCTTGGTTAAATATGAACTCACAAGGAAATAAGCAAAGCAAAAGCAAACTGTATTAAGAAGACATGAGGAATTAGGCAGGAGCAAAGGGAACTCCCAGAGCTAAGATTGATTACAGGAAGAAAGAAGTCAGGAAGCACCTACAGCCAGTGGGTGCTCCTGAGTGGTCGGCCACTGAGCTGCAAGTCAGTGGTGAGGATTATAATGACAGAAACCGGACAAAGACCAGGGTGATGTCTGTTGAGACCAATTAATTATCGGAGTCTATCAGGGGCCAAGTTAGGGGTGACACACTGTGTGTTCTTATAGTCTAACCAGGGAGATGGACATGTACTTTCCACCCAGTTAGAGGTAACTGAAGCTTCCCTCTGTACATCTCTGACTTCATCTCTTAGCTGCTAATCTTGACTGTGTGTGAGCCATTTATTGCCTGCTAGAGCTGCTAATCTCTGATCTTGTAAGGTGTTGCTAGTCTTGGACTTTGATGGAGTCTAGTGGTTGTTAATTAAATGATGTTCTCATGTTTGTTTATATAACCAGTCAGTAGTTTTACCATAACAGCCTGGGTTGAATGAGATTTTTTTTTCCCTCAGCCCAGTCAGGTAGATTTTTTTTTTTTAAACTGAAAGAAATAACACTCCAAAGCCAGGCAATACTACCCAGGCACTTACCATCCCAGTGCTCAGGAGACAGGTAAGGCACAAGAGCATTTCTGTGAGTTCAAGGCTAGGCTGGTCTACACTGCAAGTTCCAGGTCAGTCAGGGCTACACAATATGACCCTGTCTCAAGAACAAAACAAACAGCGGGTATTTCAGGGTGGAGTTTACTACTTGGTGGTAGGATTTTGCTGAGTAGATATGAGACTCTGGGTTTGATCCCCAATACCTTGTAAGTGCAGCTGCCAAAGTCCCCCTCACTTTTGCCTGATCAACCTTCTTGCAGCTCCTGGGATATGGCTGTGGTCTTCCTAGGTTACCTCACACCCAGGTCTTTGCCTATGGCACAGTCTGTCATAGGTAGAGGCTGTTTAGAAGCCATTTCTACTTACCGTTTACAGCATGGTGATTAGCTGCTATAGATGGGAGACACAATGCCTTGTGTGTGTGTTTCAGGGAAGAGGCTTGGTGGGAGTGAGTCAGAGCTGACTGGAGCCTGCTGACTCTGACTTTGTCTTCCCAGAGCCTGTCCATTCTCTGTTCTGGTCATCTTAGGTATCTCCCACCTGGAGGCAAGTCCTGATTTTTTTCCCATTCCTGGTGTTCCCAGTGCTCTTGAAGAAGGGGTACCAAGAAGGCTAAATCCTTAGTCGCTGAGCAATAGATCCTGCGAGACAAATGAGCATTAGTAAGCTCAGGATAGAGAGAACAGGTCATCAAGTACACATGTGGAGAATCACTGTCTCTGGTGAGACCAGCAAAGGGAAGGTTTAGAATGAAGTACTCTAAGGGCCAAGCACAGAAGCTCTTGGGAATGTCATGTTATTGAGAGGGGACATAACTCAAGAAGCATACTGAGCATCAACATGAGGCAAGGGGACAAGACAGAAAGGACATTCGAAGAAGACAGTCTCCAAACAGCAGCACCCCAGAAGACCCCAAACTGTCCATCATATTTAACTACCAGGTCCCTGAGATGAGACTGTACCCAAGTCAGGGGTGGGTTATGGAAGGTGCAGGGAGAAGAGTACATAGTATATCTACCTTCTAGGATGTCTCCCTTCCAGTTGGCAGTGGGATGAAGGATATGGGGCGATAATCTGGGCTGAAACAAGAGTGTCTTTCTAAGGAAAAAAATAGATCCAATCATTAGTTAATCTGCTCATTCGGAAAATAGTCAGGAGACAGGAGAGAATAACTAAAGAGGGGAGCCCCATGAAAAGGGAGCAAATGGTCCCGTCTCTGTCTCCTGGGGCTGGGAAGGAAAGCAAGGGACCCAGCTTAAGTGTGGCAGGTGCAGCCGAAGCACTGGCCTGCCCTGAGAACCTACACCTCCCTTTCTATGAGGCCAAAGATTTTCTCTCTCTTTTTGTTTTATTAACTATTTTACTTATTACATCTCAAATAGCTGCCCCCATCCGGGTCCCCTAGTTTCGCACAATGTTTCCTATGACACTGCTGAGCCATCCAATGAGAACAAACCTTCTCGAAGATGGTCTGTGGCAGCTGCTGTTGTCACACGGTGTCAGGGATCGAACTCGGGGCTTCATGCACAGGAGGCAAATGTCCTACCACCAAGCTACATACTCAACCCTGAACTGTCTGATTTTTAATACTTAAAAACTACCTGACTGGGATTTTTTGAAAAATCTTTATGCAGCCCAGTCTTCTTGTCTGAAAAATGATGCAGAACCCTTGTGGTGTTGTAGATGTTAAATAAGATGAATCAACGTGAGGAGTTTGGCACCACAGACCTCAGTGCTGAACAATGCTTGTCACCACTGTCGCTTCAATTGGGTGCAGACCCAGGTTTCCTGGGGGCGACCCTGAGTGCTGGTAGCATACAGAGCAGGGGATGTTCACAGACAGAAGCAGGCTAAGTATGCATTGCACAAGGAGTGTGAAGTGCCAGGACTCTTGAGGAAGGGACGTAAACTCTTTCAGACTGAATGCACTGTCCAGCCCTAAAGCCAGGATCTCTCTTTTCATCCCATCCTGAAAAGTCTGGTCTTTCTCTCAGCATAAAGGAATAACTGGTATACACCTGATACATCTCATTAAAATACATCTACGACTGAAATTCGCTGGATGTGGTGATTTGTACAAACAAATCACCTAGCCCTCAGAAGTCTGAGGCAGGAGGACTGCAGAAAGTCTAAGTAGAGTCTGGGCTACACAGTGCATTCCAGGCTATTCTAGGTTACAAAATGATTCAAATCTGTCCCAAACCAACAAACCAACCAAAATGAAAGTCATGTCAGGTAAACCCTTGCCTGTCTCAACTTATCTTCTTGTACAAGCTAAGAGTCTCTGGTCCCAGTCTTTGGCCAAGACGAGATAAGGCATGATTACCTCCAAATGACAGTTACTGAAGTGTAAGAAGCCCAGCCTGGATTCTTGAGTGCCTTGGCAGGCACAGGGCAGACCACTATGGAAGAGACATACTGTGTGGAGCCTCCATTGTTACGTGAGAGGAAGGCTGTAAGCAGCAGCTACTCCCAAGGGGAAGTGTGTGCCCGGGTGGACACTTCAGATCAGGTGGTCTTTCTATGTAGAGAACTGAATAAAAAAGTGAAGGACATAGGGCTGGTGAGATGGCTCAGCGGGTAAGAGACTGCCCTTCAGAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCACCCGTAATGAGATCTAATGTCCTTTTCTGGAGTGTCTGAAGACAGCTACTTACATATAATAAATAAATAAATCTTAAAAAAAAAAAAAGTGAAGGACAAGCCACAGAAACGTGAAGTGAGGTGAGGGAAGGGCTTTCTAGACAGGGGAGTGAGCAACAGGACACCAGGACGCACTGTGCTTGACAAGCTAGAAGGTGAGAATGGCCACAGCAAGGGGAAAGGGAAAGAATGAAAGGAAACAGAACAGCCTGGTCGGAAGCCAGACCACACCGCAAATAAGCCACACAAGAGTTGGCTTTTATTCCACCGTGCCAAGGGGGGCTGCAAGGGGTTTTTGGCAGAGAAGGAACATGCTTGGTGATTGACAGTTGGCTCCCACAGATGTATGTAGGGGGGATTGTCAGAACTGGGGGCTAAAGGGGGAAGGATGGTGGCTCAGACTGGGGTAACACCGCACAGGATGAGACCACTAAGAATCAGGACATATAATAATGAAGGGCGACCCACAGTGTTCGCCTATGCCTTGATTCCAGGTAGGACGTGAACAAGGAGACTCCCTTGTTTCTTCCGGGTCCACAGGTGAGTAGTGGTACCCTTCACTCCTGAAATTTTATAAATTGCTTGCTATCCATGAGGGTGTACCACAGGTTTTCCCATAGACCACTCTAGTAAGGTTGTTTTCTCAACTGATGTTCCATCTTCCAAAATGACACTAGCTTGTGTCAAGTTGATTAAAAAAAAAAAAAACTGGCCAGCACAGAGTGATTTTATGCCAAAAAAAAAAATTGTAAAGACAAGCAGGTTGTAGTTTGGTGGACCCCGACTTAGGACATCACACCTAGATAGCTAGGTGATGAAGAAATGTAGCCCCCATAGGCAAAGGTAGAGCCTGTGTCAGGAAGCGAAAGGTTCCTGAGAGCATAGGGAAGGTCTTGCTCTCCAGTCAGCTTTGGTGTTGCACTGCTGCTATGCTGCCCCGTGTAGATTCCTTCCTAGGGAGTCATCTCTGGAGTTTCATCCATTGCACAGAAGGATAGCACAGTGATTTGTTTTCTTCAAATTCTACCTAGAGAACCTATTCTAAACTACAGGCCAAAGGCCTGGTGCCTAGCGGGCTAAGAAGTACTTGACAAAGCACGTAAGCCAACAAAAATTGGAGTTTGAGCTAGACCTGGTGTGACTTGCCTATAATCCCAGTTACTTGGGAAGCTGTGGTAGGAGGATCCCAAGTCCAAAACTTCCTGGACTACAGACAGAGTGAGCTCACAGCCTGGGAAACCTAATGAAACTGTGTTGCAAACAACAATTTTAAGGAGGTTAGGGATCTTGCTTGGTGATAAGTGTTACTTGGTATTCACTAGGCCCTAAACTGAATCTTAAATACTGCAGAGAGGAAAGATACTAGGAGGAAAGGAAGAGGAAGAAGAATCGCTGAAGAGGTCACTGCAGGAATGTCCTCAAATTCCATCTCTCTTGTACCCTGCCCCCTCTTTGAGGCTCCCCAGACACCAAAACCCAGACAGTTTATTCCCTGAGCACACAGAGGGACTGGATGCTCACAGAAGCCTGTGTGGAGCTTGCTTCCTTCTGTACCAAATGCCTGGGCATCTAGAGGATGAGCCCTGCCCAGGACCATGATCTTATCCATAGACCAAGGACAGGGTTCTCTTAGAAGAAACCCTGAGTTCAAAGGGAGGCCTCAAAGCTTATTACAACTAATATGTGGTTCTGAAGCACACACTGCACAGGCTCCCTGGCTCCTGCATACACCTGGTTCTGGAAGACATGTTTACTGCCCATGAGTAAGATGCTATGTGCAGAAATAAACAAGGTGATAGTTTATGTTTCCTTAGGAACCATTTGCAAGTAGTTAAACATTAATAACATCTGTAATTGTGCCTAGGAGTTTTAACTGGGGCAGATGTTCTGGGCCCACTGGAATAGTATTGAAATGAGGAATATCAGGGGGTCTAGATACACTGTCTATATAATGTGAATGACGCCCCTTGGAGTTCGTCAGGGCATAGCACGTGGTTGCCCTATGTAAGAGAGAAGAATAGATATATAGTTTATTCATTCCCTAGCCTGGCAATATTTAAAACTACCATTCAAGATGATTCAGAATAGGTTTTAGAGCCAAATTTTATTAATACCTAGTACATGTTATACCTAGTACACATCAAATATTCCACTATAATCTCTGAAAATACCAAATCAGACTAAAGAAATAATATATCACTAACAAGCTAAGAAAACAGATTTAAATAATAAACAGGAAGGCAAAAAGGTGAGGAAACAGGACATAAAATACATGAAGTAAATATAAAGCCAAGTAACAAGTTACTAGATACAAAATGTCAACGGACTGACAACAGAAAGTTTTACCAACTTGGGTGGGGGGAAATTGCAGCTCTAAGTTGCTCACAAAAATATACATTATGTATAGAAAAACGGTAACACTGAAGGAATGGAAAAAGACAAGCGATGCAAACACAGGCCAACAGGAACTCAGCCGAGCCACGCTAGGAGAAGCCAGTCTTCACAGCAAGTGTGACCAGCAATAAGACCTATTAGTCAGTAACTGAAAGGCAACGGTGGTAACTTTCTATGCATCTTTTTAATGCACGTTAAAATATGACAGGACTATAGGGAATGGTGATTTTGATATGACAGTTTTGAGTCAACCTCTGTCTAGAAAAGATAAAATTCCTTCCCACAGGAACTAATAAACAACCAATGTCACTATTATATGTCCTAACAAGAACTGAGTGTCCATCTCTATTCATAGATCAGGGAGGCTGGGAAGATGACTTGGTAGGTAAAGTGACTACGATTCAGGCATTAGGACCTGAGACCACCGCATTCCAGCAGCCATGTTAAAAGCCAGACATAGGCCATACACGGGACAGGTGGATCCCTGGGGCTTGGGCAGCACAGGCTAGCCAAAACAGTGAGCTGAGGGTCAGCGAAAGACCCTGCCTCAAATTTACAAGGAGGAAATTAAGAGAGGACATCAACCTTTGGCTTTCATATACAACACACACACACAGAGACACAGACTAACACACACATACACAGACACACACTAACACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACACAAAGATAAAGCTAAATTTAAAAGTCAGCAAGGGCATAGATCTCTATAATACCACAATCTAAGGGACTTTCAACATAGTAATATACTAAACAAAGAAATATTTTTCAGAACAATGAAAATTTACTAAAATTTGTCTGATGCGGGGCCATAATACAAATTATCAAAAATGTTCTAAGGACTTTCAAAATGACAGAACATGTTTCTAACCACAGTAGAACTGAACTAGAATCCAGTTGTCTTTAAAAATTATTTTTTAAAAAATCTCCAAATGTTTACACATAGCAGTGAATAATAGCTTTTATTATTAACAGTAATGACCAGATATACTTTACACATTCAAGAGCTAAAACTCCCTCTGGTAGCCATGTAAATACACGTCACACACAGGGTGGACTGTGGCAGGTGCACTAGAGGGCTGTGGGTGATGAGAATGAAGGGGAGCAATGGACAACGGCACGTCCTTTGACCTGGGAGGACCGACGGCTGGGAAAGACGTCAGAGCAGTAGAGAGACACTTTAAGGTTAATACTTACAGAATGGGAAGAACTGAATCGGGCAAAGACTGAAGAAAGAGGCTGTGGATACCTAGACCATGAGTGTGACACGGTCAGCTACACATGAGGACCGGAGTCAGAGGCGAGTGGACTAGTGCAGAAGTGAGCCACCAGGAGCACAGCAGGGTAGCAAAACTGAAGGCTGTAGGCACTGAGAGCCAGGACAGGCCCTGTGGGTGTTATTCTAAGGTCGACAGTAGCAATCACTGGAGCGTTTTTGATAATATGTATCTAGGAAAGGTTAAACCTTGCAGCCCGGCCTGGCCTTTGTGTATGAGTCGGACCCTAGCTGGTGCACCTAGAAGTGTGGAGCTGGGAGACTGGGAGGGGAACTCAGCCTTGACAGTGATGTGATGGGGGAAGGGAAGAGAAGGAAGCTGTAGAGAAGCCCAGGCCTCCCTCCTGACAGCCACCCACATCCCTCACCCGCACAGCAGCCTAACAATGCATTAAAATCGCTGCCTAATTGCTCCTTTCAAAGTTAATGCTCTCAAACGGGGAAGTGTGTGTTTAATGTTTAGTCTCATCTCTGCCGCCCAAGCCCCAATTTGAAAGCCAAATCTTTTTAAAAATAGAATGAGATAAACCCCTAGACACAGCTCCGACCCTCAGAATCCCACGTTTTCCTTCTTCAAATCTGTCTTTCTTTGGATAAGTCACTGGCAGTTTGAGCAGGTGACCTGGGAAACCTGTCTGGATCGAATCCCGGAGAAGCTTCGGCGTCTCCTTCCTGGCTCCATTCTTGAACTCTCAGGCAGAGCGGAGGAAGCTCTCAGTTAGGCCAAGGCATGACTGGGTTTCTGCCTCTTCCTGTCCACAGCCGTCTCCTCTACTGGAACCCTGTCCATTAGAGCAGGGTGGCCCCCAGGGATACCTGGCCACATTCAATCTAGAGGGAAATGGCTCCCTCTCTTGTTCTCAGTGATCACTGCAAACAATGCATTGGCACAATCTTTGCACTGGCTTCTAGATTTACAGCCTCCAGCCACAGCCTGTCAGCAGTAGGTACCGATGACATCGGAGGTGTACCTTCCCCCTGGAACACTGACACAGAAGTAAGGGGGCAGGAACCATTACCCCTTCCACTGTTCTTTCCAGGCACCCAAATCTACCTACTATTCCTCTCTATAATTCTCCCACAGATAGCTTCTGTTAGGAAGCCAAACCTCTGTCCCTAATGCCCTTGTCACCAAGGACATTGATGTCACCACACACTGCACAGTTCCTACCCTGGAGTTAAATGGAGCTTCTCTGTTACATCCTTTGGTTGTAGCTCCCATGTCTTCCCTCCCTGAAACAGCTCAGTCCTGGTCGTCCGTGTTCAGTCTCCTGGCAAGATCCTTTGAGGTATCTAGAGCCTTCAAATCATGAAACTTCCTAAGTCTCCATTTCCTTGTTTATAAAATAAAGATGAAAACATTATAAAGATTAAGATGGTTATAATCATTACATGAGAAAAATGCATACTCTAAAAGCATAGAAAACAATAGTTCTAGCTACAATGGATGAATTGATCACTGAAAAGCCTGGCCTTGGCTCTGAGTTGCCTGCCCCTTATTCTTTGTGTGCTGTGTGTGTTCACCTGGGTGCCTCTACATCCACATCAACATGGTGCAGTACACAGAGCCGAGCTAGGAAAACACAGCTGCGGGCAGTGCTCTACGTGCTGTGTGCACTTAGCACAGTAGCCTGCCTGCCTTCTCACCTTATTAACTACCCTGAGAATACATATCACGGCTTGTGCCTGTAGACGGGAAAGTAGAACTTAGAGAGGAAATGAGATGTCCCGCCAATGTCTGCATGACTGGCAACTGACGATGTGGACTGGGTAACTCAAGAGCCCCCTCTTCCTTCCGCTGTATACTGAAGTACAGTGTGCTAGATCTGGGGCAGCACTCAGAGAAGCAGCCAGGGAGCTGAATCAGCTGCTAACGGCGACTGACCAGGCGACTGACCAATCAAGTCGTTCGTTCGTAGGACCAACTGGTGAGTGCCAATTGCTAAGAAGCAGGACTGCTTCACCTACTGGCAGAGTCTTAATGCTGAGCTTCGCAGACATCCATACCAAGACTTTTCCGGGAATCTTGTCCCTTCCTGAAGGCGAATGGTTCTGATTCTCTTGGGTGATATTAACTGTCTCTGTTAATTGGCTTTTCATCAATATAGCAAAATACAGGAGAGCAACAACTTTAAAGGAACAAAGGTTTGCTCTGACTCTTGACTTCCCAGGCTTCTGCCTGCAATTGCTCCATCCCTTTGCTGTGGGTTTGTAAACAAACAGAACTCCAGGGTGGGGAGAGCAGAGCGTGAACTGATCTAGCTGTCAGAGAGCAAAGCTGCTCCCCCATTGTAGCCAGGGAGCAGAACAAGGATCCAGGGAGAGGCAGAAGCTTCTCAGCCACACCTCCCGAAGCCCTCCTCCACCTAGGCCCCTCCTCCACCTAGGCCCCTCCTCCACCTAGGCCCCACCTCCTAAACACCCCTGGCTGCTAAGTCACTGGTGACTCAGAGTCCTTTCAGAAGGTTGTCCCCTTGTGATCTAGCCACTCTCAATAGCGCCACCACCAGCTAGGAACCCAGGTATCAAACTGTGCACCTTTTAGGAGGACAATTAGCATTCAGCCCACAAAGTGGTGCCTGAGTCGGCTCAGGCACTAGTACAGAGACAGACGGGGACGGGCAAGGGTAGGCTGAAAAGGACAGACGCACAAAGCTGGTAAAGCCTGGTGCAGAGATCCCAACATGCCATGCTTCCGTTCCCAACCTTCTGCCCACTGTTGGGGAATCTCCTTCCCTTAGAGAGGGTCTGAATGCAGCTAAGTCTGGGTGTAAGATGGAGTTTCAGACACGGCACTTTTCAAACTGTAGTATGCCGCCAGATGCCCCGGGACTCTTGTTACAAAGCAGATGAGCCCGACAGCCTAGTGTGGGCCTGAGATTCTATATTTCTAACAAGGTCTAGGTGCCCATAGGCCACACTTTGAGCAGTGAGCTCCAGATAGCCCTTCCCTTTGGCCTAGGACACTAGGAATCCTGATGTTTCAGCACCCCGCCTGCTGTGTTTCTCTTCACAG
Seq C2 exon
ATGCCCAGAACGCCACGTGTACGGAGCCTGCTGAGCTGAAAGGGTGGCCCATCACGAAGGTGGGGAATCCACTCCAGTACATGTGCATCACACACCTGGACCAGCAGGACTACATCTTCTTACTGCTCATCGGCTTCTGCATCTTCGCTGCCGGCACGGTGGCTGCCTGGCTCACGGGTGTATGTGCTGTGCTGTACCAGAATGCCCTCCGAACGTCGAGCGGGGATGATACCGAAGATGAAACTGGGAGTAGATTCGCCAACCAGATTTTTCGAAGCAACACACACTTGGGCCCCATTCGTCGGTTCCCTGAACTGATCTAGCTGTCAGAGAGCACCACCGACTGTGCCTTCCCTGGTCTGGCTCCCTGATTTCTCTCTTGCCCTCCCATTTTACCATCACTGTCTTGGAGACTGAAGCCCTCTAGTAAAATAAAATATTTGGTGGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040485-Lrrc52:NM_001013382:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.028
Domain overlap (PFAM):
C1:
PF074736=Toxin_11=WD(100=10.1),PF0146213=LRRNT=WD(100=13.5),PF138551=LRR_8=WD(100=28.8),PF138551=LRR_8=WD(100=29.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: