HsaINT0096985 @ hg19
Intron Retention
Gene
ENSG00000162763 | LRRC52
Description
leucine rich repeat containing 52 [Source:HGNC Symbol;Acc:32156]
Coordinates
chr1:165513478-165533185:+
Coord C1 exon
chr1:165513478-165514155
Coord A exon
chr1:165514156-165532741
Coord C2 exon
chr1:165532742-165533185
Length
18586 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TGCTGTGTTTTTCTTCTTAGATG
3' ss Score
10.7
Exon sequences
Seq C1 exon
GATCAGAGGACAGAGCCCGCAGGAAGGTGAAAGGAGGGTGGTTGTGGCTTCTTACTATGTCCCTTGCTTCAGGCCCTGGCCCTGGGTGGTTACTCTTTTCCTTTGGAATGGGGCTGGTATCAGGGTCAAAGTGTCCAAATAATTGTCTGTGTCAAGCCCAAGAAGTAATCTGCACAGGGAAGCAGTTAACCGAATACCCCCTTGACATACCCCTGAACACCCGGAGGCTGTTCCTGAACGAGAACAGAATCACTAGTTTGCCAGCAATGCATCTAGGACTCCTCAGTGACCTTGTTTATTTGGACTGTCAGAACAACCGGATTCGAGAGGTGATGGATTATACCTTCATCGGGGTCTTCAAACTCATCTACCTTGACCTCAGCTCCAACAACCTAACCTCGATCTCCCCATTCACTTTCTCGGTGCTCAGCAACCTGGTGCAGCTGAACATTGCCAACAACCCTCACCTGTTATCGCTTCACAAGTTCACCTTTGCCAACACCACCTCTTTGAGGTACCTGGACCTCAGAAATACCGGCTTGCAGACCCTGGACAGTGCTGCCTTATACCACCTCACTACTCTGGAGACCCTGTTTCTGAGTGGAAACCCCTGGAAGTGCAACTGCTCTTTCCTGGACTTCGCCATCTTCTTAATAGTGTTCCATATGGACCCCTCAG
Seq A exon
GTGAGGGCTTGATTGGGTGTGGGGAAGAGGATGTGATTGAAGTGGCTCCAGAAAAGGTGAACTCAAAAGATGGTCAGAATGGGAGAAAAAGTTGGGTGAAGCTGATTGAATGCATTCTTATTACTCTGCAGGGCCCACCCTTGGGTTGACTGGAGTAGCAGTAAGAAAAAGTTCTGAAATAGGAATTCAAAGAGCTGAGTTCTGGTCCCAAACTCAGCACTTACCAGTTGGCTACCCTTGAAAATGTCACCATTTCTCTGAGCCTCAGTTTTCTAATCCATAAAGTGGGGACAATAATATTACCTAAGGCACAGAGTTGCATCAAATATATGATGTGTGTAGAAATGATGAAGTACTCTAATTGCAAAGTGACAAGGTAATATAGGGACACTGTATTCTGTTGGTAAACTGTTTTAATCTGTTTAATTCAGCAACTGAATTTTTCCAGGATCAAAAAGTAAATTCAGTCATTCATATAGGATTATGATATATAGAAAGGAAAGTTTAACATAAAGATGGAAGGAGGGGCACGTGAGCTACCCAGACAGTGAGAGAGGGAGGGAAGAAGGAAGAAAGGGCTTTTGATAGCTGCTTTGTTTTGAAGATGCTGGCCTCCTATGGAAGGAGAGAATGGCATGAATCAATGGAGAAAGGGTCCAGTGCTCACTGTGTCAAGCAGAGAGATTCTAGTCTTACAGGTAGATAGATGCTCAGCTCTTACCTGGGAGATTTCCAAGCTCCTTGCCACCACTCTACCCGCTGTCCTCACCCGGCCTGCCACGGCCCCTGTGCTTCATTCCCTCTTTATCTTAGGGACTTTACTGTCTCATCCTTACCCTCCAATTCTTCTCTCCACCAATAATAGCATTTTTACCCAGGAAAGTCAGAGCTTCAGAAAAATGAGAAATAACTCCTCACAGAAAGTCTGGAGCCACTGATGTAATCCGGCAAAATTGGACTCTGGGTAGAAAATCAAATCCTGTCAAAACCATGTAGTTTCTGTCTTCCCTGGGTGTTTGCCTTTGAAAACGTTTTCATAGACGCAGCTTCATAAAACTCCTGCTGAAACTTCCACCATGAAGTACTGCCCAGGTGGCAATATGCTAGAAATAATCCTGGCCAGAATGACAGACTTCAAGGAGAACTGGGGGAGAGAGAATCAAGTGGTGACAGTAAGTAAAAAACGTGCCCTCCTGGCTTCCCAATGGGTGTGTCTCAAAAAGTCCTCCTGGCAGAGTCTGGACTGGGATGAGGCAAGCAGGGCTTTTAGGAGGCAAAATTTAAGGAGGCACTGAGAGCGAGTGCACTGAGAATAAGACATTGTGAGTCAGTGCCTCCTTAAATGTTGTGCCTTAGACACCTGACCCTACTGCCAGATACCTCAACTTGAGTTGTTAGAATAAATCAAAAGAAACTAACTTTGTCAGACCATCTTCCAACAGGACTAGAATGCAGAAGCAGTTATCTCAGGTAGGTTGCCTTGCCTCTCTATAACACCAACTCTAGGAGGCAGAGATAATGTTTTCTACTTTTCTCCAAAACTGTGATAGTGTCTAGAAAGCACTATCAAAGAGGTTCAATATTAATCATCCTCATGCATGACCTGTGGTCCATAAAGGGGATTCTCCCCTGTCCATGTTCCTGTAAATTAGCCTGTGGAAGGGTGTCATCTTCTTTTGCCCCTCCCCACCATACATGCACTTTTCCTTGAGTATAGCCCATCAGGTTGCAAGTGGGACCTCCCACCCCAGATGACAAGAGTAACATAGCTTGGCTTCCACCCCAGCACCTAAGCCTACCATTTCACCTCCCACTCCATCTCCCTTCATCAGATTTCTGCTTGCACAGTTGTATCTTCTCAGAATTTTCAGGCTGACCACTTTGGACTCCTTGACTCTTCAGTTCAATCCACAGTTGAATGGGATTATAAAGTAGATCTTTTTCACCGCATATTTTCCAAGACATCAGAAAGGAGTGTCTATCTTGTCAAGATTATAAGCTCCTCATGAATGAAGAGTCTGTTTTGTGAGGTAGACAAAGCTTTCATCCCCCAGCCGTGGGACCCCACACACGTACCCACAACTGCTAATTTGCTCATCTCCCTCCATTTTTCCACACATGGTACCTCATTTCCTTTAGCATGAGTGTCACACCAACACTTAAACTTGTGCCCTCAGCCTGTGGAAGAGTCTAGGATTGGTATTTTTAACCCTATCCTTGGATGAGAAAATAGACTCACCTGCCCAAAATCACACAGCTGATAAATGGCAAGAAAGTGACTTGAACCCCTTGATTTCAAATGCAGGTCTTTTTCCACAAGACTATACTATCTCGTAAATCCTCAAATTACATAACTATCATCCTGTAAGTGAGTTTAGTTATAAATATAAGTTATATTATAAACATATGGCTACAGCATCTAAACTTCAGCTTTATTTTCTATCTGGCTGCCGCTTGGAACTGGGAAATGATCTTGAGATCATTTTCATTGGATAATAAGCACTAACCGTCATAAATCCATTGATATGCCTGTACTTCCCTTGCAAACCCAGGTTTCACCCCAGTCTACCCCAACTCCAAAAGGGTGAATCTAACCTTAGCATTTGCTCTCATTTGGGCCTTAATCAGTCTGGTTCTTCCTTCCCATACACACATACAATCACAAATATGCACACAAACACACATGCAAACACAAATACCTACACACACATATGCAAACACAAAGGTTTGTATATACCATATATACATATGTTCATACCATATATAAATACATACTTACATACCCACACGTATATACCATTTATACATACATACCTACTTACGTACCCATCCACATATTACATACACACACATAAATGTACAAGTTCACACTCATATACATGAACAGATACATGCATACCCATAAAGTTGAACACACATACAGTAAAATTCATTAGCTGCTTCTCTTGCCTTCTAGCCAAACCTCAATGTAAGGAAAGGTATTTAATTCATTTGACTCTCAAATGATGGTTCATGGTCTCTGCTACGTGGAAATATCTTTGCTATTGGCAAACATTCTTGGTGAAGTTTCAAACTTAAGCCCACCTATTTATACCACATTTGTTATCAAAATGGTGATCTTTGACATATTCTAGCATGGAGCCCATGTATCTCTCTACATATATCCACATTTCAGGAGATAGGAAGATTTCTATGAAATAACCTGAGTTATCTGGTGTTTATAAAACAGAATCCATTTCACAAACAGACTCATTTTAGGCCCAAGGAAATACTGAACCTTAGCCCTGGGAAATTTTCACTGTAGTGTAATATTAAGGGCAATATGAGAGTGCATATATATTCCTTGAAAAGCAATGCAGTGAAGTAAAGGACTTCCATGCTACAATTCAGTTCATCCATTTATCTATTTAAATACTTATTGAGTGCCTACTATGTGCCAAACAAGTGCTCATGAAGGTAACTAACCAAGAAACCTGAGGTTGCATATGGAGACTTACGTAACTCTAGGTCATCTGTGCCATATCTATGTCATAGTTTAGTTGTGCATAACAGAACAAAACAGGGCAGGACAAACGAGGCCAGCATGTGCCTGCTGGGGTGACAGGCACTTGGGGCAGCCACTTGTCCTCCAAGAGATGAAGGACAGTCACCCTCAGGCAGCAGAGCCCAGTGTTAAGAGCTCAGGTTCTGTAATAAAATTGACGGGTTATAATTCTAGCCCTGATGCTGACTATCTGCAGGATATAAGATAAGTTACTTAACCTCTCTGAACTTTAATTTCCTCATCTTGAATACAAGGATAATAATAGAACCAACATTCCTAGGGCTGTCATAAAATGAAATGAGAACATTTATGAAGTACCATTAGCATTTAAGTTTGACACACCATAAGCAATCAAAAAACAAATGGTTGGTAGATGAGGAAAGGTACAGGATACTAAGAGAGTAGAATACCAGAAAGCAGTCAAGTGTTCCCCTAGATAAGCAGTGGACTTCAGGAAGGCTCAGCATACGTGGTGTTAGAGGACAACGCACCCTGTCTAGAAATATGACTATAGAGATGCAGGCGGGAATATAGATAGAATGTGGGAAGGTGGGTAGCTGCTTCTAAGACTCTAATCCATACAAAAATGGGGCAAGGAGAATCCTGGAGGGACAGGACAAGTCTATGTCACATTCTGACTAAGTTGGGTATTATTAGATAAGTTAAGAACATGGGTTTTCAGACCCTAAGGAACAAAAGCAGAAGCTCAAATCAAGACTTTGTCTCAGCCTGGGCCATGAGACTTGGGGCTGGACCAGCAGCAGCAGGGTGCCTGTTCCTGAGTCACCTGAACCTAGAACCAAAGCTCTACCTAAAGACAAGCTCCACTTCCAGAGGCAGGTGTGGATGTGTAGACTACATTCTAGGGATGTGTAGGCAACTTTCTCTAGCCTCAGGAGAAAGACTTCACCTACATGGTATAACTGAGCAATAAATACTTTTGCCCCAATGTGTCCCTATCCACTTCCTACCACTAAGCTGAAATTAGTCACTAGAGGTTCATCCTTTTGGGTCCCAATTATGTGTTATGATCTTGAAAAAGAAACTGCAAAAATACATGAACTCCTGGGAAGAATAAGACAAGTGTCCTTAAGCCTTTATCAGCTCTCATATCAGAAGGAGGAGTTAATTCTTGGGAATTTGATTAGCTAAGATTAATTCTGCAGCAGTGGAGAACCTTGAAGGAAACAGAGGTGCAAGAAGGAAGTGGAGAGGTCTTAAAAGAAAAGACATGAGGGCAATATCATACGCTTCTTCAAAAAATGTGCCACATTTTTGCTAAGGACCTCCCCCATAGAGGGGTTGTAGAGGAAGCCCAGTGTTTCATTCATTTTATTTTATCATAAGGCTACACTGAACAAGAATATCAAAACTTTCTCAAGTTGGCGAGATCTGGCACCATAATCAAAGGTCTGATTCAAAAGAAACTCTCCAATGGCATACTCACCAGATGTACTGAAAAGTATTCAGTTCTCAAAGAGTTAATGTAGTCATTTTTTTAAACACGAAAGTTACAGCAGAAATGGAGGTGTGTTGTAATGTGTCCCTTGCTAGGGTGCTCTATTGAGCCCTGACCAATACAGACTGAAAACAGACCCACACATTCCATTTCCTTTCTGGCCCAGGTTAGCAAGTGGGAGGACTAATTCCTGGCCAGCACTGTTATTTTCCAGTCATTAATGCTACTTGAAGGTGAGAGTGGTCATTGAGTTCTTCCCAGGATATTTGATTTCCCTCAGGGGACAGGGTTGAATGGCTTTCAGGAGGCTCTCGAAAACTCACTCAAACTCTAAGCTCCAAAACATACAAAACCTAGCCTCATACATCCCATTCCCCTCTACCCGCAAAGTCTGCTCTAATGCTGTCCAATAGAAGTTTCTGCAACAGGGTAAATAGTCTATATATATGGTGTCGGATACAGTAGTCACTAGCCGCATGTGGCCATTGAGCTCTTGAAATTTGGCTAGAACAAATGAACTGAATTTTTATTTTATTTTATTTCAATACATTTAAATAGCCACCTAAGGCTACTGGCTACCATACTGGTTAGGGTAGCCTTTTAACATAGGATGTTTAAGCTGGAACTTTAGAATCCAGAGTCACAGGTAAGTGGCTATAGAGAAAAGCCCAGCACAGAGATATCCTGACATCCAAGTTCAATGTTTTTCCCTGATGCCATGATATTTCTTTGCTGTCAAGCACATCATGATCCATTTAACTCTGAAACATTTATTGTATATTCATTATGTCCCCAACATTGCATTATAATGCTGGGGTGGCTGTTTCACCGAGAAAAAAAGTCATAATTTTTGTCTTGAATAAGATAATCTAGGATACGAGAAACAGAAAATAGAATTGAAAGCCAGGAAGCCCTGTCTTGATCCCAGAAATGCCACTGTGTGATATGGGGAAACTCACTTTCCTTCTTCAAGAGTCACTTTTCTTGTCCTTAAAATAAAGGATTTGGGTTAGAGATCCTCAAAGGCCTCCTATAGCTGGTAGCCTATGGACCTAAATAGAAAGATAAGCACACAGGAGGTGAGAGGAGAACAGCGCTCAGCAGGCAAGGTCCCAGGTGAGCAAGTGCAGAGTGGCAAGTGCTGAGGCGAAGGTGTTCCCAGTGATGAGGGCTACATCACATAATTAGGAAGTTCATTTAAGAAACAGATGCCTCTAACTCCTGTACTCTCCCACCTCCTATATTAAGCACCCTCAACTTCACTAAAACAATGCCTCCACCCCAAGAAACTCATTGCCCCAGACTTTCCTCCCAGGCCAGACCTGCTCAAACAGTGCTTCTCAAACTCTAATGAGCACAAGAATCCCAGGTCCTATGCCCTGAGGTTCTGATTCAGTCAACTCTTCATGCCGGTTGTCCTTAGGCCACTTTTCAGAAACCCTAGAACAGTGGCCTGTGTTCTGGACCTTCAGTGGCTGTTCCAATTAGTAAATGAATCGATTTGCTCTGAGATGCTAATGGCTAGTGTTTTGAAATATCCCCTCAGGGAGCATTTGCAATTTGACAGGGAACAACCAGAAACAGTGAGAATTCAGAAAGTGACAGGCTACCAGGGGCTAGAGTGGGGCGGTTTGAGGACAGAGAGTCCCCTCTGTGTCAGCTCTGATAGCCTTAGCCAGTACTAAATGAGCCTGATGGTGGGGCCCACACATCAGAGGAGCTTGAGCAAGGGTGCTGCAGAGGCAGTGGACAAAGCCACTCAGGGCCATCTGCAGGGAGCAGATGGGTTGAGTCATGTGCTGCTTCAGGTCCAAGTCATTTTGAGGGCGTTTTGAGCAGAGAACATCTTAGTTTCATTACGAGGTTATATCATCCTGTATTCAAGACTGTTGTAATGGGATAATGGCCCCATTTCTACCTACCAAGTACAAAGTCATCCACAACTGTGCCCAAACTTAGATTTCCGGAATGAATTCAGGTCCTCACGTTATTCCACTATCAATGCTTACCCATGTCCTCCATCAGGGAAATTAAAATAAAGACCAAAGGCTAAAAAAGAAAAAAAAAAAAAAAAGGCTGGGCAACCAGCAGCTCCAAGGCTTCCAAGGCTGTTGAAAGCCAGAACAGCAGCCTCCTGAGGGCAAGGAGGGGGCTGAGAGGGGTGCAACTGAGTCAGTGATCCCTAAGCCACCCAGAAAATCCAAGAAGGGATAGGAGCAGCAAGCATGGGACATTTAGGAACCCCTGGGTGATGCTGACACACTCCCTGACTCAGGCCAATTGGGATCCCTGAGAGTAGGTGATCGAAGGTTACTCCAAGCTCAGAAATGCCAGATTTCTACACCTGGCCCCTCAGGTCACCCAGCATCACTCAGGACTCTGAAAAACAGCAGTTCAAGTCTGGCTAAAGCAGCCAACCTCAGTTTGCTCATCTTTAAAGGTGAAGAGCTCCTCATCCTGGAGGTAATCCTACAAAGGATGGATGTGGCTAGAGAAAAGAATGGGGGCCCAGCTAGGAAGGGCCTTGAATGGTTTTCTGGGGAACATGCAATATATCCTAAGAAGTCTTGGGAGGCAAGTGAGCTGGAGGTAAGGCTAGGAAGGAAGCTCCCGTAGGCGTTCAAGCCAGACAGTATGGCAGCCTATGGCAACAGTGAGGAGGAGAGGTGTAGACATTTGAGAAGGAATCATTTAGAAGGCAGAAGCAACAGGATTTGGGACTGAACTAGCTCCTCTCATAGTTTCTTGTGCACCCTTTGTAACTTCTGGCACAATTCTAATTAATAAATGTGTATTCATTTAACATTTGTCTTCCCTGATAGACCGGAAGCTCTATGACAGCAGATCTGGATCTTCGGAAACAAGCACAGGCCTGACACAGAGAAAATGCTCAACTAGTGTTTCCTGAGTGAATGAATGAGATACAGAAAATATAGAAAAGGGAAAAATCAATGGTAGCTCCCAAGACTTTGGCTTGGACAGTGTGGGGGCTTTGCTGACATAAACACACTTGGAGGAGGGCAGTGAGGAAGTCAGGCTAGAAGTCAAGTCCCATCTTGACCTTACTGAGTGGGAAGTCCCTGTAAAACACTAGGCATTTGTATGTTCTGACCTGAAATTCAGAATAGAGGACAGGGCATAAAATATACATATATTTGGGGATCATCAACTTACTAGTGATCACTGAAACCTAACAGAAGATGAGATCAATCAGGAAAAAGAGTTTCAAGTGAGGATAATAAGGGCCAAGTACAGAAGCTTTGGGGAATGCAACATACTAAAGGGTCAAGTAAGAAAGAGCAACTCATGTAGGACAGCAGGAGCCCCCAGACAAAGGAAATTAGAACAGGATAAATTCATGGAAGCCAAAGAGTTCCAAAAAGTGGGAGCAGGTCAGATAAGGACAGAAAACTGTCCATCAGATTTAGCACCAGGGATCCCTGATGTCTTGGGCAGTTCTGCTGGCATGATGAGAGTGAACACCAATCCATAATGGGCTATGAACTGAACATAAAAGGTGTGAAGGAGTAAACCATGTAAACTACTCTTCTAGAAAGCATGGCTGTGGACTGAAGGGAATAGGGTGCTAGTTGGAGAGAAAACAAATGAAGAAGGAGGATTTTTAGGAGAAAAGAGATCCAACCATGTGTTTATCTGCTGATGGAAAGAGTCGATGCAGAGAAAAAGGACAAAGATACAAGAAAGAGGGGAAGTCATTGGTGGGGTAAAGTCCCTGAGAGGACAGAAATGGATGGATGATCTCCAAGGGGTAATCCTTGAAAGGGGAGTGGCACCCCCTCTGCCCTCTGGGACTGCAGAGAAGGAGGCGAGGGTAAACATAGATGGGGGTGACTGTAATAACAGGGGACAAATACAATTGAGGGGCCCAATTGGTGCCTGTATTTCTCTTTCAGTGAGGTGAAAGACAAAAAATGACTATATATCTATAAAGTACACATTTTCATGTAATGTTTTCTATGAAGCTTCCATAACACCAATCCAATTAGGCGACTATAAAATATCCATTGTCCTTGAGATGCTCACATCCTAGTTGAGCAGGCAACACCAAGGTGGGCTGTGGATGCAGGCCACCTGTCATTTCATCCTGCCTCTGTCACTTGCCGACTACTTGACTGTGGGCAACAATCTCCATCCAACCCAAGTCCTCATGTGCAAAATGCAGATAAAATAGTGCCTATTTCCTCAAGTTGTGATAATTAAATGAAAAAACCCACATGAAGATTTTAGAACTGCACACAGTACATGTTCAATTAATGCTAGCTGTCGTTGTTGTTACAAATTCTTTGCCTGGCAGTGATTCTGAGTGTCACACGAGATGCAGAGGACGGGTAAAGCAATGTGGGTTTGCAGAAACAAACAGGGTGAGCAGAGGCAAGGAGTTCAACTTGGGGGAGCCAGAGCTCTTGAGGGGGACGTTAAAGCTTCCAAGATGATGTCATAAAAAACACCTAATCTGCTGCATGACCCATATGCAATGATAGGTGGTTGTTGTTGTTGTTGTTGTTGTTGTTTTTTGGAGGCAGACTCTTGCTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGTGCAATCCCAGCTCACTGCAGCCTTGACTTACCAGGCTGGGGTGATCCTCAGCATCCCCAGGAGCTGGGACTATAAGTATGTGCCACCATGCTTAGACAAATTTTTATTTTTAGTAGAGATGGATTTTGCCACATTGGCCAGGCTGGTCTGGAACTCCTGACCTCAAGTGATCCACCCACCTTGGCCTTCCAAAGTGCTGGGAGGTGTGAGCCACTGCACCCGGCCAATGATAGCTTTTTTGATCACACAGAAGAATTTGGCCTTCTCCTCAACCCAAATAAGAGAATAACTAAAAATCCAATGCATCCAATTAAAACATAGTTAAGATGGAATTAAAGTCATGTTAGACAAACCCTTGTAATTTTCAATGCATTTTCTTCTAACAGCCAAGATGCTTTGGTCACAGCATTTGGCTGAGATGAGGCACAGGCATTGTCATCCCTATTTGACATTTACAAAGAGGTAAGGAGCCCAGACTGGGATCTGAGTACATGCATTCACTGACAGTTACTGAGCACCAATCAGATGCCAGCCGCTTGGCCAGGCACGGGGCATACTGGTGTGAACAGAAACAGACATGCTCTCATGAAACTTACATTCTAGTGGGAGAAGAAGACAATAAATAAATTGACATATGACATAATGTCAAATAACAAGTGCCATGGAGGAAAATAAGAGAGGGGAAGAGAAGAGTGTGCCTGAGATTGAGAACAAGGCAGATACTTCAGGCTCAGTGGGCCTGCGGAGGTGGTTTTGAGCAGAGAACTGAAATAAAGTGAGAGAGAAGCCAAGGAAATATTACAAGGGGTGGAAGAAGGTCTTTCTAGACCAAGGGGAGAACGAACACAAAGGCTCTGGGCTGGAATAGAAAGGGAATATGGCTGGAGCAGAGTGAAGGAAAAGGAGAAAGGGAAGAAATGAGATAGAAAATTACTGAGGCCAGGTCACGTAGGGTAGATAGGCCATGGAGAGGCTTTTGATTTTATTCTAAGTGTGATGGGAAGTCATGGAAGGATTTTGAGCAGGGAAGTGACATGATCTGTAATTACAGATTGCTCCCACTGCTGTCTCCAGATAGAGATTGTAGGAAAAAGCAAGGACACACATTCAGAGGCCAACACAGTTCAGGCAAAAGAGGACACTGGCTGGGACCAGGGCAATGGTCCAGGTAATTAGAAGAGGTAAGAATCAGGATACATTTTGAAGGTAGGACTAGCAGGGTTTGCTTATGATCTGAACATGTAATGTGAAAGAGGAAGCAAACAATTTCTGCCTGATGTTTCTGCCTGGTGAACTGGTGAATGATGGTGCCCTTCGGCTCCTGGGGTTTCACAATGGTTTGTTATCCATGAGGACAACTGTCTGCTCTCTGGATTTTTCTGAGCAGATGGGTAGTTATTAAGCAGGCTCAGCTCTAGGCCAAACTGAGAAGAAACTAGAAGAAAAAAATTTAATTTTTAACTTCCAAGAAGAACCTGGTCCCAGCCGCCAGCCCCACCATGCAGCTTGTTCCCCTCACCCCACCAAAAGGTGGTAGCAGGGGGCTACCCCTGAGTAGGGATTAAGTCATTTGCTTCTTTTTCAGAAAACTTTACACTTTGAGTGTTATTTTATTGGTGAAATGGAATGTTTCATCTCCCACTGACAGAGTTCTGGGTACTGACAAGCCCATGAGAAGGAATTATGAGAAAAAGAAAGCTTTTTGCCTCTGAATCATGCCCATTTGCAACCAGTTATACACGAGACCAGTTCTGTAACCTAAAACACCTGTAAAGCACAGGAATAATCAGGTTGAACTTGCTAAACGTCAAGGTCTCATCTCCATGTTCCATGAGTCTATGAATCACTTTTAACCTTTAAAAATCTATAGACTCTATATACAAGGGGGGGAAATTGTGAATACCAGATAAGAATTATACTTTGCACAAGCCCAAATAACACAAATCCTTAAGGTTTTAAGGTGCCTAGGATGGATTAGACCAGGAGTCAGCACACACTTTCCAGAAAAGGCCAATAGTAAATATTCTAGGCTTTGTGGGTCTTCATTGCACCTACTCAACATTGCCATTAAGGTGAAGGCAGCATTAGAAAATATGCAAAAGGATGGGAAAGCTGTGTTCCAATAAAACTTTGTTTACAAAACAGCAGGCTGGATTTGGCCCACAGGTTGTAGTTTGCTGACCCCTGGCTTATGCCATCATTGCATGACAGCTGGGCAATGAGTAAGTGGAGCTCCAGAAAGGCAAAGGTAGAAGCCAGTGCCAGGGCTTGAAATTCTCATAGGTTTGTGCATGAGGATCTGAGAAGGGGCCTTGTTGGCCAGTTGGCTTTGGTGTTCTTGAGCAGTCATATTGCCCAACCTAGGTTTCCTTCTAGGGAATCATCTCCTCTGGGCACCTGTAGTACGACAGAATATATAATAGTGATCCCTTCATATTCCATTTGGGGAACCTGTCCTAAACAACAGGCCAAAGACATCAGAGTTTTAAAAGTGCTATAGGAGATCAGACCAATAATCCACCCTTGCATTCATTTATTGAGCACCTACTGTGTGCCAGGCACTAAGGATACAAGAGTACAGAAAAAGGGTCTCTGCTCTCAAACAGTTCTCGAAAAGTAATTTGGAAATAATAATAATTACCTTTTGATATCATGTCTGCAGCAGTTTGTCCTCATACTCTTACCCTTGTTTCCTTCTCTTCAGTCTCACAGGACAGAGGAGGTGCTCTTCCCAGTTCAAGGCTTATACCTCCATTTGGTCCTAGAGAGCATCCATTCCTGCCTCCTTGGAGCTTCACTTAGCTCACTGAACCCTCCCCAGACTCTCATAGGGATTGGTACTCACCCAGTGTAGAGTGTCCGAGGCAGTCCAAGGTCAGCTGACCCACCTATGGTATTCTACCACTCAGGTTCCCTTTCCTCCACCTGAGCATTACGTCAGGGACAGTGAGCCCAAGGGGTTTGAATAACAATCAATTCATTCAACAAATACGCCCTGTGCTCTAGCATCCTGATAGACGTCAGTGAACAAAACAGACAAAAAATTCTTATGCTCATAGTATCTGTAATCTAATGAGTGGAGTCAGAAAAATGAATAGGTGGCAAATCAATTTCCTTGACAAAAACATAATTTAGCTTGCAAAAAAATGGAAGGCAAAGCACTGTACATCTAGTGATATTTGGGTGGACTGGGGCCTAAAAGAAAAAATGGGGGAATTAGGCTTTTCTCTAGATCCAGGGTAGAAGTTGACGAAGTGCTTGACAAGGTGCATAAAGCTGATAGAAACATAATTTCCTCACTGAGAAGTAATTGCAATGCCTTCAGATTCCACCCTCTTGCTTTCCATTGCCACTGCCTAGATGCTCACCCCTCCAGTCAGCCCAGAAGGTTCCTGAGCAAGCTGCCACAGGGGCTCGAGCAACCTGCCCATGGCCTGGCTCCTTTGGGGGCACCAAGGCCCTGGGAACCTGCAGCACAGCCCTGGGCAGAACTGGGGTCCCTCCTGAAGACCAAGAAAAGAACCATTTCCCCTTATAACTGGCGGGTTCAATACTGTTTTCTGAAAGAGAGGCCTCCTTGGCTCCTACACTAATAGGTGTGGTTCCAGGACCCAGACACCGTAGTTCTTCCATGCATCTGATTCTGACAAAGAGGTTTTCTGCCTTTGAGCAATATGTTGTGTACAGAAATAAACCAGGTGGTGGTTTATGTTTCCTTAGGAACTATTTGCAATAAGAAGTTCAATATTAATGACATCTGTAGTTAATGCCTGGCCCACTGGAGTGAGGCTGAGGAAAGGGATGGCATAAAGTTGGGTCACCTGTCTATAAAATTAATGGAAGCTCCTGGAGTTGTGCAGTGCACAGCATGTAAAACAGTACTTGCCGACCCCCTGTGTGAGAGGCAAGGAAATTAAGAAAGCCAGAGAAGGAAGAACTGATGTATAGTTTATTCATTCCATAGCATGGGAATAATTAAAACTACCCTGTGGGGTGATCAAAAGTAGAGCTTAGAGCTTAATTTTGTAAAGCATCTCATATAGTGCCTAGCACATGTCAGGCACTCCAGGATCAGTAGATGGGTATAAAACCTCTGAAGTCATCATACTAGAATAGTAAAAGAAGGTATGGTTAACGAGCTAAAGAAAAGGAAGTTAAATGATTTTTTTAAAAAAAGGAGGCAACAGGTTAGAAAAAGGACATGAAATAAGTGAGACAAATAAAAAAATAGATACTAGGTATAAATCCAAATATATCAGTAATTACATTTAATGTCAATGGGCTTATTAAAATACAAAGTTTGCTAGCTTGGATGAAAAACAAAACCCAGCTACATACTGCTTACAAAAATATACCTTAAATATAGGAACATAGAAAGATTAAAAGTAAACGGACGGAAGAAGATACACAATGCAAACACTAACCAAAAGAATTTCAATGCAGCCATACTAATGTTAAACAAAGTAAACTTTAAGGCAAGAAGCATTACTAGAGATAATGAGAGATATTGGTCAATGATAGAAGGGTAATTCTACCAGGAAGACCTAACAATTATAACTTTGTATGCACCTAATAACACAGCTTTAAAATTTGTAAAGTGAAGGCCAGGTGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCAAAGGCAGGAGGATCACCTGAGGTCAGGAGTCCGAGACCAGCCTGGCCAACATGGTGAAATCCCATCTCTACTAAAAATATAAAAATTAGCTGGGCGTGGTGGCGTGTGCCTGTAATCTCAGCTACTCAGGAGGCTGAGGCAGGAGAACCACTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCAAGATCATGCCACTACACTCCAGCCTGGGCAACAAGAGTGAAACTCTGTCTCAAAAAAAAAAAATTGTGAAGCAAAACTTGAAAGAACTATATGGAGCAGACCAATGCACAGTAAAAACTGGTAATTTTAAATAATTAGAGGAACTAGTAGACGATTGTCTAATAATAACTAAGAGACAATAGATGTTTATAAATAAAAAGTCAATAAGGGTATAGAAAATCAGTACACCACCACAACCTAACTGACATGCATAGAACAATGTACTCAACAAAGAATACAGTAAATCCTAACTTAATATCCATAGGTTCTTAGAAACTGCCACTTTAAGCAAAATGACATATAGCAAAGCCAACTCTACCATAGGCTAATTGATAGAAGCAAGAGTTAAGTTTCTAAAGCTTATTTCTAGTCACAAAAACATCATCAAACTTCTAATAAAGATCAAAAAACCCTTCTAATATTTAGCATTGAAATATGAAACATACATACATTTAAGAAAGATTTATACAAACAAGTAAGATAATATTTGCCTAATTATTTCAGTTCAGGGTTGTGAGTGGCTGGAGCCTATCTTGGCAGCTCAGGGTGTAAGGTGGGAAGCAGCCCTGGCCAGGACACCATTCCATTGGGGGCCATGCATACACATACTCACACATACTTAGACTGGCACAATCTAGACACACCAGTCCACCTAATATGCACATCTTTGAGATGTGGGAAGAAACCAGGGCACCTGGAGAAAACCTGTCCAGACATGGGGAGCGCACACAAACTCCATACAGACAGTGGCCCTGGCTGGGAATACTTTTTTTCTCATTAACATTGTAACAAAATGACATAGAATGAAATAATGTTGTTAGAGGATCTACTGTATAATATATTTGTAGCACATGGAAAATGTACCAAAATTGACCTTACATTCAGCCATATAGCAAATTCTCAAGAAATTTCAAAGGATCAGAGTGTTTCTATAGAATTAAACCAGAATAGTAGGATTAACCTAGAATCTCATAATTTAAAAAAGTACCAGAACATCCCTCAATTTTACAAATTACACAATTCAGTCAATGAATGATAGCTCTTATTAACAAGAACAATAATGATCAGACATGGTTTATACCTTTAAGAGCTAAAAGTCTACCTGGTAGGGGAGAAAGGATGCACATTGTAAATAACCATCATGCAAGATAGAATGTGATAGGTACTTAAGAATGACACAAGGAAATGCTAGGGATGAGTTCACGAGTGGGAACAATCACATGTCCTCTGAGCTCTGAGGACGGGGTGGTTGAGGGAGGTCTCCCTGGAATAGACGCATTTAGGCTAGATCTTAAAAGATGGGAAGAACATGATCCTGCAAAACTAGGGGTATGAGGCATTTGACAAAAAAGGAGCAGTGTAACAAAGTAACTATAGATGAGGGCAAGGGTGAGGTGTAATCAAGGCATAATATGTAGTTTAATTTAACTGGAGCAAAGGTTACCAGCAGTGCTGAGAAGGAGGGAAGGGGAGAAGGGTAGCTGCTGAGGGGCTCTGAATGCCAGGCCAAATGGTCTGGGTGTTATTCTGAGGTTCACAGGAGGTCAGAGGACTGTTTTGAGCCAGAGTGTGACCGAGAAGAGCTGTACTTGGGGAAGGCAATTTGGCAGAAGTGTGTGAAATGGCCCCGAGCTGGGAAAAGGAAACAATGGAGATAGGGAGCCCGGGAGGGGAGAGCCCAAATCTTGGCAGTGACTGCGACTGGGAAGAGGGGGAGATAATTCAGTGGGAGAGAAACCCAGGCCTCCCTCCCAACAAAGCCACCCACATCCCTCACTTAGCAGCCTAACAATGCATTAAAATCACTGCCTAATTGCTCCTTTCAAAGTTAATGCTCCAAAATGGGGAAACGTGTGTGATGTTTAGTCTCATCTCTGCCGCCCAAGCTGCAATTTGAAAGCCCAATCTTTTTAAAAATAGAATGAGATAAACCCCCCTAGACACATCCCAGACCCTCCGAATCCCATGTTTGCCTTTCTCAAATACATCTTTCTTTGAAGATTCATGTGTCTCCCACAGTTTGGGCAGGTGACCTGAGCTCTCTCTCGATAGAATTCCTGGAGAGCTCCCAGGCGCCTCCCCTGCTCATGGGAGCCCCATGCCCAGGCCTCCTGGGCAAAGCCACAGAGGTCCTCAAGCCAGGCTGACTAGAAAGAGGTACAGAGGCATAATTGTGTTCCTGCAACTTCAGCCCTCAACTCCTTTCCCTCTACTTGAGAGCTCTCTGGTGGGGCAGGTTTGCCCTGAGGGCCACCATCCCACACTGTCTAGAGAGAGGCTTCTTCCTCTCCCTTCCTCTGTAATCATTACAAACAGTGGATATGACACAGTTCGTGCACTGGCTTCCCCTCTTGTGTCTAAAAGCTTGAGTCCTAAACAGCATTACACACTGCACACCATCTTCCTGAACAAAACAAAATGACTTTGCTGTAGGTGCATTGATACAGAAGCAAGAGGCAAGTATTGGTGTCCGGGTGAAGAGGACTGCTCTTTCCAGCCACCCATAAGCCCAAATGCCTTCTCCCCAGCCAACTTACTTCTGTACTTTTTCTTTGAATGCTGCTTCCAGCCCCCATTAGGATTTACCTAACTGAACCTGATTTTCCTAACATCCTGGGTCACCAAGGATAGTGATGTTTTCACTAGTCAGGCAGTTCCTGCCCTGAAGTTTAGAGGAAACTCCTCTCCACAATAGCTCCTGTTTGCAAATCCCACTTACGCAAAGCAAGCTCACACTGGCTTTCTGTCTTCTGTCTTCTATCTTCTATCTAGATTCTGCAGTTATCTAAAACCTTCAAGTTATGGGATCTCCTGAATCTCAGTTTCCTTATTTGTAAGACAAGGAAAATAATATTATGTGCATCAAGGTTATTATTAGAATTAAATGAGATATTTGTAAATAACTTAGTGCATAGTAAGCACTTAGCAAATACTGGCTGCTATTATAATTTTGATTATGGTTGTCTCAAGCCCTGAGCCGGAGCTCAGTGATCTAGTGTGTGCTGGATACATTCACCTGAGCACATCACACAAGCACTCAGCCTCAGCATGGAAGAGTATATGGAGTTAGAAAAATGTAGGGGCAGTGATAGGGCTCCGAGGATTCCGTGCTTGAGGCACAATCACCTGTGCCTTCTTACCTATGTCAGTCAGTTCTCTCAACTACCCTGAGAAGTGTCATTCTTTGCACTGGTAAGATGAGGAAACGGAATTCAGAGACAGAATCCGGTATCCTGCTGAAGTTTACAAAATTAGCAAGTAACAGAATCTGGATTAGAAGCCTGGCCTGTCTAGCTCCAGAGCCCACTTTTCTTTCTGTTATATAGTGAAGGCCATGGCGCTACATATGGGGAGGTGCTCAGAGAAGTAGCCAGGAAGCTGAGTCAGCTACTAAGACTGACTGAAGACTCATGTCGATGACATAATCAGCCAGTGATGGCCAACATCACCACCAAGAAGCAGAACTGCTTTCCCTATTGGCAACCTGTTTACCCTGGGCTCCCCTGACTTGCTCCGGGGGGAAAGTGGTGAGCGGGTAGAACACACAGTAAACATTTCAGGAGAATCTCGTCTCCTGAAGCCTATAGTTGAGTGGCTTGCAATGCTCTCGGGGGATGCTAGTGATGCCAGGTTGGACTCAGCTACTGCTAAAGAGAAAGGGACAAGGTGAAGGGAAAGTCGGGATGGAGGCAAGGGAGGGGCAAGAGGGAGGTGACTGGTAAAGAACAGAGAGATGTCAACACTCCATGGCAATCTTGCCTAACCTTCCAACCTCCCCACCCCTGTTGTGGCCTCTCCTTCCTTGAGCATCCTTAAGAAGCATTTTCATGGCCTGAATGCAGCAAAGCCTGGGGACAAGGAACAGTCCAGGCCCAGTACTTCTCAAACTCCAATGTGCAACAGATACCCTGAAGGTCTTGTTGAGATGCAGATTTGGATTCAGGAGGTCACAGGTGGGTCCTGAGATTCTGCATTTCTAACAAGGTCCAGGTGATGTCGATGCTGCTGGCCCACAGACCACACTTGGAGCACTGAGGGTGCAGATGGTCCCTCCTGATCCCCTTTGGCCTTAGGACGCTGGGAGTCACGCTGTTTCAGCACCCTGCCTGCTGTGTTTTTCTTCTTAG
Seq C2 exon
ATGATCTAAATGCCACATGTGTGGAGCCCACAGAGCTGACAGGGTGGCCCATCACCCGGGTGGGGAACCCACTCCGATACATGTGCATCACGCACCTGGACCACAAAGACTACATCTTCCTGCTGCTCATCGGCTTCTGCATCTTCGCCGCGGGAACTGTGGCTGCCTGGCTCACAGGTGTGTGTGCTGTGCTCTACCAGAACACCCGCCACAAGTCGAGTGAAGAAGATGAGGACGAGGCCGGGACTAGGGTGGAAGTCAGCCGGCGGATTTTTCAAACCCAGACGAGCTCGGTCCAGGAGTTCCCTCAGCTTATTTAGTTGCCAGAGACCACTATCTTATGTGCCTCCCCCAGGCTCCCTGCTTTCTCTCTTGCCCTCCCCATCCCACCACCTTGGAGCTGTCATAGAGATTGAAACCTTCTAGTAAAATAAATAAAATCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162763-LRRC52:NM_001005214:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.066
Domain overlap (PFAM):
C1:
PF0146213=LRRNT=WD(100=13.5),PF138551=LRR_8=WD(100=28.8),PF127992=LRR_4=WD(100=20.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)