BtaINT0087689 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012844 | LRSAM1
Description
Bos taurus leucine rich repeat and sterile alpha motif containing 1 (LRSAM1), mRNA. [Source:RefSeq mRNA;Acc:NM_001075296]
Coordinates
chr11:98205021-98207833:+
Coord C1 exon
chr11:98205021-98205111
Coord A exon
chr11:98205112-98207702
Coord C2 exon
chr11:98207703-98207833
Length
2591 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
CCTGTGTCCGTCTCTCGCAGAGT
3' ss Score
11.38
Exon sequences
Seq C1 exon
ACCCTGAGCCTCGACGCGTTGTCCATGGTCTACCCCCCGCAGGAGGTGTGCGGTGCTGGCACTGAGGCCATTCAGCAGTTCCTCTGCAAAG
Seq A exon
GTAAAGCCAGGCAGCCCACCTCCTTCGCTGAGCGAGCACAAACCATGGCCCCTGGGCTGCTCTGTGCCAATGAGGCAGCTGAGGGTCCCTGCCTGCCCAGAGCTCTGCAGATCTGGCAGGAGGAGCAGGGAAGATGATTGTCACGTGAGGAAGTATGATGGCTCAGATGGTAAAGAATCCGCCTGCAATGTGGGAGCCCTGGGTTGGATCCCTAGGTTGGGAAGATCCCCTGGAGGAGGGCATGGCAACCCACTCCAGTATTCTTGCCTGGAGAACCCCATGGACAAAGGAGCCTGGCGGGCTACAGTCCATGGGGTCACAAAGACTCAGACACAACTGAGCAATAAGCACAGCACAGCACAGCAGGTATAAATGTATAAATGTGTCTGTAAAATTTTTGGTTTTGCTGTCTTAAAAACATTTTAAAAAACCCACAGAAGATGTTGCACCAGGCAATTCTATGCCCTACCTTTTTCACTTAAGAATAGGTCCCAGGCCTTTCCTGTCCCATGACGTGTGGCTCTGTCTGTTGTAAACTGCTGTAGAGTATTCCCAGTGGAACCACTGAGAGTTATTTCCCATTTGCCCCTGGAACAAACGCTTTAACCTACACTTCTCTGGCATGTTGGGAGCATCCCCTGGAGGGAAGCAGGGTTGGTAGGTGGACAGGGACAGGCGCTCTGTATTGCCTCTGAAGAGGCTCCATCGGTTTAAGTTCCATGAGGAGCATCTGAGGACTCTTCTTCCCCACAGCCTCGCTAACAATTGGTGAGATCTTTAAAAGTCTTCTAACCTGATGGATTATTAAAAAGAAAAGACATTACTTTGCCAACAAAGGTCCATCTAGTCATAGCTATGGTTTTTCCAGTGGTCATGTATGGATGTGAGAGTTGGACTATAAAGAAAGCTGAGCACTGAAGAACTGATGCTTTTGAATTGTGGTGTTGGAGAAGACTCTTCAGAGTCCCTTGGACTGCAAGGAGATCCAACCAGTCCCTCCTAAAGGAAATCAGTCCTGAATATTCACTGGAAGGACTGATGCTGAAGCTGAAGCTCCAATACTTTGGCCACCTCATGTGAAGAACTGACTCATTGGAAAAGACCCTGATGCTGGGAAAGATTGAAGGCGGGAGGAGAAGGGGATGACAGAGGATGAGATGGTTGGATGGCATCACTGACTCAATGGATGTGAGTTTGAACAAGCTCCAGGAGTTGGTGATGGACAGGAAATCTTGACATGCTGCAGTCCATGGGGTCGCAAAGAGTTGGACACGACTGAGCGATTGAACTGAGCTGACCTGAACCTGATGGGTAAACAAGAGGAGGAGGGTGACAGAGGATGAGACGGTTGGATGGCATCACTGACTCAGTGGACATGAGTTTGAGCAAGCTCCGGGAAATGGTGAAGGACAGGGAAGCCTGGTGTGCTGTAGTCCATGGGGTGATAAAGAGTTGGACACGACTTAGTGACTGAATGACAACATTATTATTTTAATGTCATTTCCTTGAATATTAGAATACTTTTTCACATGTTTACTGTCCACTTTTAGTATTTCTTGTGAATTGCCTATTTATGTCCTTTGGTAGGGGAAAAAGGATGACATTGACTACATTAACATCTAACCTTTACCTCAAAAGGATACTATCATCAGAGTTAAAAAGACAGGCTCCCTAGGTGGTGCTAATGGTAAAGAATCTGCCTGCCAATGCAGGAGATGCAAGAGACCCTGGTTTGATCCTTGGCTTGAGAAGATCTCCCAGAGTAGTAAATGGCAACCCCCTCCAGTATTCTTGCCTGGGAAAATTCCATGGACAGAGGAGTCTGGCAGGCCTCAGTCCATGGCATTGCAAAGAGTCGGACATGACTGAGCATGCACTGCTAAGTCATTTCAGTCGTGTCCGACCCTGTGCGACCCATAGACCACAGTCCACCAGGCTCCCCCATCCCTGGGATTCTCAAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAATGCATGAAAGTGAAAAGGAAGTCACCCAGTCATGTCCGACTCTTCGAGACCCCATGGACTGCAGCCCACCAGGCTCCTCCATCCATGGGATTTTCCAGGCAAGAGTACTGGAGTGGGGTGCCATTGCCTTCTCCAGAGCATGCACACACAACAAAATAAAAAAGTTAAAAAATAAGCTGGAAGAAGATAGCTGCAACATATGTTATAGACCCAAGGTTATTAACTATCATATGTAAAGAGCACTTATAAATCAGCAAGAATAAGGCCAAATGGGGAAAGTGTATGAATCCTTTCAAATGTACGGGAGGCAGCTACCCAGGAAATTGTGCATAGAGCTGGGTCTTGAACCCAGGCTTCTCTACAAAGCTCAGGCATTTTTCATCTCCTCATTCTCACGTGGATGGTAAAGAGGCAGGGGGCGGGAAGATTTATTCGCTCAGCTGACGCTTATTGAGTGCTTGCCACATTTACGGCCCGGGCGTTAGGCCTATGAGCAGTGCAGGAGAGCCAGCATCACAGGGGAGCGGTGGACTGCTCTGGGTTGCAAGGCGGTCTCCTTCCCTCCTGGTCAGCCTGTGTCCGTCTCTCGCAG
Seq C2 exon
AGTCGGGGCTGGAGTACTACCCCCCTTCTCAGTACCTGCTGCCGGTCCTGGAGCAGGATGGGGCTGAGAACTCCCTGGACAGCCCCGACGGGCCCACCGACAGACTCTGCAGGGAGGAGGAGGAGTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012844:ENSBTAT00000017067:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.568
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development