BtaINT0087846 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019839 | LTBP1
Description
Bos taurus latent transforming growth factor beta binding protein 1 (LTBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001103091]
Coordinates
chr11:15795292-15797703:+
Coord C1 exon
chr11:15795292-15795519
Coord A exon
chr11:15795520-15797680
Coord C2 exon
chr11:15797681-15797703
Length
2161 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TCTTTCTTTTTTGGTTTTAGTGG
3' ss Score
9.32
Exon sequences
Seq C1 exon
CTGCTTTTAAGGAAATCTGTCCTGGTGGAATGGGTTATACGGTTTCTGGCGTTCATAGACGCAGGCCAATCCATCACCATGTAGGTAAAGGACCTGTATTTGTCAAGCCAAAGAACACTCAACCTGTTGCTAAAAGTACTCATCCTCCACCTCTCCCAGCCAAGGAAGAACCAGTGGAGGCCCTGACCTTCTCCCGGGAACAGGGGCCAGGAGCGGTGGAGCCAGAAG
Seq A exon
GTGAGAGTGGAAACGGATCATGGAGCTAGCCTTCTGTCTTGTGTGTCTTTGGTTTCCCTGTATGTAACTTCTACAACAGGGGCTTTCAGCCTCGGCACTATTGACAGTTTGGGGTGGATAATTCTCTGATGTGAGGGGCTGCTCTGTGCATTATAGGGTGTTTAGCAACATCCCTAACCTCTAACCTCTAGTGCCAGTAGCACCCTCCCCCTCCCGATTGTTACAACCAAAAAGATGTCCAGATATCACTAAATGTCCCCTGGGGGAAGAATTACCCCTGATTGAGAACCACTGCTCCAGAACAATTGTGACAGCATTCCATGATAATCTAATGACATTGTCTTATGTTTGGGGGCTACTTTTTCTTGCTATTTACTCCTGGATAGTGGTTTAGATTTTTCAGGGAATAGCCAGAATTTGCTTCTGTATCTAGAGAGCTGTTTAATAAATATGTGTTTACTTTAAAAAGTGGAATCCACAGGCTTGAAGCATCAACTCAGCTTCCATGAAATAGTTTCACAGGCAGTCAGGGATAATGGGCAGCAAAATGAAGGAAGATAGGGTCCTTGAAAGGGATTTTGGAGAGAGTTCACCTAGTGAAGTCCTTTGATTTGCATTTTGAGAACTGGAGACATAGAGCAACTGACCTGCAAATGTCATACGAAGAGCATGTGATAAAACCAAGGAACACATTTTTCCCAGGAGGTGGTTAAGGCCTTCTTCTCCAGAAGGAGACTAGAGACAATTCGTTCTGTTTCAGAAAGAAGGATTATCTATCTTTGTCTCTTCATAGAAGCCAGCGTGTCCAATACTTTGAATATCTTTTTCACCACAGAAGTGCTCACCCCAGATAGGATGAACAAAAATCATAACTTTGTGTGGGATAGGTATTGGCTTTCATAAAGCTTCTGTTGGTCTTTCACACTTGGATCTTGGATGGGAGTTCAGGGTGTGCATTTATGGATTTTGTGAGGAGAGAAGGGGCTCAAGCTAGATGAGGCATTGGGAGCATGGCAAGGAAGAGAGGTCTCTCTTCAGGGCTCTGAACCTTCATGTGCTGTAGCCCAGTTAAGTCCGCTCTTGGACTTGCTGCACTTCTCCTTGGTTAGGCAGATGAGGCAGGACCTCATCTAAGATCGACAGTGCTGGCCACTTGGTTCCTGGACGGTTGGCCAGGTGTTTGCAATTCCTCCTCCTCTTCATAAGCAGCAGAAAATGGGCTGTGGTCCAGATTCTGCCTCAAGAGTTTCTTGGTGGTAGGTTAGACAGGCTAGAAAGTTTATTGACTTTTTCTAACCACAAGAATGTTGCAGCAGTGGTAGCAATCTGGTACCCTGATTGCGTTTAGGAGTAATGCATCTACCATATCTTATACTAATGTTTATGGAGATGTTGACGCATGAGCAGAATCCCTGTGATTATTGATCTAAGTTTTGAGGACTAATTCTACAACTGATTTTTGAAGTGTTTCAAATGGAAAGGCATAATCACTACCACCACCACCCTATAATAATGTTGGTGATTGTGTAATCTGTGATTTGTTCAACATAGTGATGCTAATTGCTCATTGAATCTTGCTGGCTTGTGATTTTTTTTTTTTTGTAATCTTGTTAGAATATCTTTCTGAAAATGCTCACAGGGCTTCATTAAAGATCAGTGTGCACCAAGAATGCAGCACCCTTTCTTAGGTCTCTTACTGAAACAGGGGCATTTATTTTTTTTTTAACATTGATATCAGAAAGCATTTCAAACATTGTTTATTATATTAAGGATAACTGTAATGAAAATGTTCCTTTTCTAAGGCATGGAAAGTGCTACAAAATTGTGAGTAGGCATGAGACAATGAATCAGGAAGTGTTGCCTCCTATGACTTTAATAGTTAGTGAGTTGGAAAGAACTGCATCCCATCTACTGCTGATCTCCTGCAATTGAGGAATGACATACAGTTTTCCCCTGTCAGTCATGTGTAAAATGCTCCAAAATGGTAGTTGACTATAATTCTGCACTTGATTTAGTTTGATTCTTAATCCTTTTGGAGACTGAACTTTTGTTGCTTTTTATTTTTTTATTTTTATTTTTTTGTTGCTTTTTAAAAATTGAACTATTATGTAGTAAACTGTCTTGAGTTGTACTAATGTTCTTCTTTCTTTTTTGGTTTTAG
Seq C2 exon
TGGCAACTGTACCTCCTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019839:ENSBTAT00000026435:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.769 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(11.9=6.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development