RnoINT0087499 @ rn6
Intron Retention
Gene
ENSRNOG00000033090 | Ltbp1
Description
latent transforming growth factor beta binding protein 1 [Source:RGD Symbol;Acc:68379]
Coordinates
chr6:21318563-21321049:-
Coord C1 exon
chr6:21320822-21321049
Coord A exon
chr6:21318586-21320821
Coord C2 exon
chr6:21318563-21318585
Length
2236 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
TCTCTCTTTTCTGGTTTTAGTGG
3' ss Score
8.96
Exon sequences
Seq C1 exon
CTGCTTTTAAGGAAATCTGTCCTGGTGGAATGGGTTATACGGTTTCTGGCATTCATAGACGCAGGCCAATCCATCAGCATATAGGTAAAGAAGCTGTATTTGTCAAGCCAAAGAACACTCAACCTGTTGCTAAAAGTACTCATCCTCCACCTCTCCCAGCCAAGGAAGAGCCTGTGGAGGCCCTGACCTCCTCGCGGGAACATGGGCCGGGAGTGGCAGAGCCTGAAG
Seq A exon
GTGAGCCTACTTGTTGGGTGTGGGTTCTAGCCATCCATTTCTGTGTCTGTACTTTTGTGTTTGTTTTTTGTCCCTTTAGAGCATGGCTCTTATCCTTAACGATGGTGACATTTTCAAGTGCGTAATTCTTTAATGGGTGAGGAAGCTATACTGGGTGATGTAGGATGTTCAGCAGTGAATGTTCTTTGACTTTTATGTCACACACACACACACACACACACACACACACACACACACACACACACACACTCTATACTAAAAAGGTACCCGAACATTGAATACATCCTTAGGTCCAGTATGGACCATTTTCCCTGATTGAGAGTCACTGCTGTGGTGTGTGTACCTACCAGGTAACAATATTCCATGTGAATTCCAGAGCTACACTAGCTTAATGTTTACTCCTGGAGAGGGATTTTCATCTTCAGGGAATAGTGCAGGTTCATTTCTGTGTCCAGATTTCTGGTGCATAAAGGAGAATCCACAGGCTTAAACACGTCGAAACATGGGCTGAGCTTTTGGGAGGTGGTAGCAGGCAGGTATGGGATACTGCCAGGTTACAGGCAGGAAAGTAGGAACCTGTCAGTTCAAGAATCTGGGAGGGCCGGGGTAAAGTCCTTTCATTTACCCTGTGAGAAATTCAAGACATAGACCTGACTTGTTGCATGTCATAAAAAGTGTATAATGGGACCCATGACTAAGGGCAGAAAGTCTAGTGATCTCTAGTTTTGACAGTCTCTGCAGCCCTACCCCTTCCCCAAGAGAGATTTTCTTCTCTCCTTAGTGTATAGTGTATTCTGTGTGATTACCACAGAAAAGACTTGTTCCTGAAAAATGGAACAGTTTTGGGTCTATAAGAAATGTATCTATTTCCTCACAAAACGTAAAAATAAAACGAAAAGCTCTTTTGGCGTTTGCCATTAATTCTTGGGTAAAGAGTTGCCCATTCATAAATCATGCGGGAGCTTGGCATAACCTCCTTCCCTAGTGGCAGGGGTTGTCCTGAGCTCTGAGCATTGGCGCCTTCAGGCTTATTTCTTCCCACTGGTTCACTCACTGTGCTGTAATTACTCCTGGGGTAGGCAGAGCAAGTAGGACCTCACGTGATATTGTCTCTGTCGACCAAGGTCAGCAGATCTCAGCCCGTGGGTCACAACCTCTTTGGGGGTTGAACATTTCTTTCACAGGGGCCTCCTAAGACCACCCCGCATATCATACCTTCACACTGTGGTTCATATCCATAGCCAGCTTATAATTTTGAAGTAACACCAAAACTAATTATGTGGTCAGGAGTCACCACAACATGAGGGGGGGTTAAAAGGCAGCGTTGGGAAGGTTGAAAACCACTGGGATAGGTTGCTCATCCTCTGTCTCTTGAAAGGAGATGGGTACAAGTATGGTTGCCTCTCGAATTCCTTAACAATGGGTTTCATAGGGTAGAAAGACAGCTTCCTCCCATCAGAAGAATAGTGTTTTTAATTTATCTGGTAGGCTCATTTCTTCCTGGAATTAATGCATCCAACTTATTTGCTAATAGTTAAGGAGACAAAGTGACTCAGAAAATTCCAAGTAATAAACAAAGTTGTTGACTAGTGCTAGGAATTGCTTAATGAAAACAATCATTTCAAAAAATACAAAGACTTCACCCCACCACAATAACACGGCTGATTGAGTAATACTTAAGTTGCTAATTATATTGATGCTAAGTTACAATTGCCTCTTACTGGCTTATGAGGTGTGGCTTTTGTTCCAGTGAGTGAGCATGAAAATAATCAGAAGCCTTCGTTAAAAACTGGATTATGTTAAAAAAATGCAGTACCCATTTTCATGTCTCTATGAACAATGTCATTCTCTTTTTTAACACTGACATGAGATGGATTTCTGAACCCTGGAAACATTGGTTTTCTAAGACACGGGAAATACCCCAAGCCCAAGATTAAGCATTAAACAATGTTTCCGGAAGTGTTTTCTTTAAACTTGAGGTTCATTTTCTTAATTTTGAATGAACGGCTCTGAACCTTTGATCTCTGAGCCTTGGTAGCTGAATACACAAAAAGTTCTCCCTCACTCATTCCTAAAATCCTCCCATGTGGCAGGTGATTGGCATTTTGCATTTGACTTAATTTGCTTTGTAATTGGGCCGGGGAGATGCTGGCTTCCTAATTCCCTTTGAAATCTGAAGTCTGATGAGTGGGTTGTGCTCCCTGTACTAATTCTCATCTCTCTTTTCTGGTTTTAG
Seq C2 exon
TGGTAACAGCACCTCCTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033090:ENSRNOT00000047674:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.656 A=NA C2=0.688
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(11.9=6.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]