MmuINT0093684 @ mm10
Intron Retention
Gene
ENSMUSG00000001870 | Ltbp1
Description
latent transforming growth factor beta binding protein 1 [Source:MGI Symbol;Acc:MGI:109151]
Coordinates
chr17:75276396-75278974:+
Coord C1 exon
chr17:75276396-75276623
Coord A exon
chr17:75276624-75278951
Coord C2 exon
chr17:75278952-75278974
Length
2328 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCTCTCTCTTCTGGTTTTAGTGG
3' ss Score
8.79
Exon sequences
Seq C1 exon
CTGCTTTTAAGGAAATCTGTCCTGGTGGAATGGGTTATACGGTTTCTGGCGTTCATAGACGCAGGCCAATCCATCAGCATATAGGTAAAGAAGCTGTATATGTCAAGCCAAAGAACACTCAACCTGTTGCTAAAAGTACTCATCCTCCACCTCTCCCAGCCAAGGAAGAGCCTGTGGAGGCCCTGACCTCCTCGTGGGAACACGGGCCGAGAGGGGCGGAGCCCGAAG
Seq A exon
GTGAGCTTCCATGTTGGATGTGGGTTCTAGCCAGACATCTCTGTATCTGTACTTTGGTGTTTGTTTTTATCCCTTTAGAGCATGCCTCTGATCCTTAATGATGCTGACATTTTCAATTGTGTAATTCTTTAATGGATGAGGAAGCTATATTGGATGTTGTAGGATGTTTAGCAGTGTGAATGTCCTTTGACTTTTATTACACACACACACACACACACACACACACACACACTATACTAAAAAGGTCCACACACACACACACACACACACACACACACACTATACTAAAAAGGTCCACATACACACACACACACACACACACACACACACACACACACACACACTATACTAAAAAGGTCCCTGAATATTGAATACATCCTTAGATCCAGTATGGACCATTTTGCCTGACTGAGAGGCACCCTGTGGTGTGTGTTCCTAGTGGGTAACAATACTCCATAGGAATTCCAGAGCAATGTTTTGCAGTTTAGGAGCTATAGTAACTTAATGTTTATTCCTGGAGAGGAATTTTTGTCTTCAGGGAACAGTACAAATTCATTTCCGTGTCCAGAATTCTACTGTATAAAGGAGAATCCACAGGCTTAAAAATGTTGGTGGACTGAGCTTTTGTGAGGTGGTAGCTGGCAGGAGGGATGCTGCCAGGTGACAGGCCAGAAAGTAGGAACCAGACAGCTCAGGCATCTGGGAGGGCTGTGGGAAAGTCCTCTCATTTACCTTGTGACAGATTCAGAGACATGACTTGTTGTGTGTCATAAAAATTGTATAATGGGACCCATGACTAAGGGCAGAAAGTCTAGTGATCTCTAGTTTTAATCTCTGCTTGCCCTCTCCCCAAGAAATATTTTCTTCTCTCCTTAGTGTATAATGTATATTGACTATTTTGATTACCACAGAAAAGCCTTGTTCCTGAAAAATGGAACAGGTTTTGGTCTGTAAGGAATGTATCTCTTTCCTCTAAAAACATAAATAAAACAAAATGTTCTTGTTGGCTTTTGCCATTAATTCTTAGGTAAAGATTTGCCCATTTGTGAGTCATGTGGGAACTAGGCATTACCTCCTTCCCTAGTAGCAGAGGTTGTTCTGGGCTCTGAGCATGGTGCCTTCTGGCCAATATCTACTGGGTCACTTACTGTGGTATAATTCTTTCTTGGGTAAGCAGAGCAAGTAGGACCTCACCTGGTATTGTCTCTGTCTACCTAGGTCAGCCATTCCCAGCCCGTGGGTCACAACCCCTTTGGGGGTTGAAGAATTCTTTCACAGAGTTCTCCTAAGACCATCCTGCTTATCAGATATTTACATTGTGATTCATAACAGTAGCAAAATTGCAGTTATGAAGTAACTTTTGTGGTTGGGAGTCACCCCAACATAAGGGTGGTTAAAGGGTCGTAGCATTTGGAAGGTTGAGAACCACGGGGCTTGGTTGCTCATCCTTTGTTTAGCAGAAGGAGGTAGGCATAAGTATGGATCTGTCTCTAGAATTCCTTAACAATGGGTTGCATAGGGTAGAAAGACAGTTAGCTTCCTCCCCTTGAAAGAGTGGTGCTTTTAATTTATCTGGTAGGCTCATTTCTTCCTGGAATTAATACATCCAATTTATTTGCTAATAGTTAAGGAAACATAGTGACTCAGAAAATTCCAAGTAATAAACAAAGCTGTTGACCAGTGCTAGGAATTGCTTAATGAAAACAAGCATTTCAAAAATATGAAGACCTCACCCCCACCACAATAACATTACTGATTGAGTAATAGTTAAGTTGCTAATTATATTAATGCTAAGTAGTAATTGTCTCTTATTGACTTATGAGGTGTGGCTTTTGTTCGATTCAGTTAGCATGACAATAATCAGAAGCCTGGATTATATTTTAAAAAATGCAGTACCCATTTTCCTGTCTCTATGAAACATTGTCATTCTTTTTGAACACTGACTTCAGATGGGTTTCTGAGTACTGGAAGCATTTGTTTTCTAAAACACGGGAAGTTGCCCAAACTCAAGATTAAGCATTGAACAACTTTTCAGGAAGTGTTTTCTTTAAACTTGAGGTTAATTTTCTTAATTTTGAATGAATGTCTCTGAACCTTTGATCTCTGAACCTTGATAGCTGAACAATGAGAGGCACAAAAAGTTCTTCGTCGTTCATGTGTAAAATCCTCCCAGGTACCAGGCGATTGGCATTCCACGTTTGACTTAATTTGCTTCGTAATTGTTTGGGGGAGATACTGGCTTCCTAATTCCTTTTGAAATCTGAAATCTGATGAGTGGGTTGTGCTCTGCTCACTGTACTAATTCTCACCTCTCTCTTCTGGTTTTAG
Seq C2 exon
TGGTAACAGCACCTCCTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001870:ENSMUST00000001927:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.703 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(11.9=17.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types