BtaINT0087892 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021957 | LTBP2
Description
latent transforming growth factor beta binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6715]
Coordinates
chr10:86194300-86194823:-
Coord C1 exon
chr10:86194692-86194823
Coord A exon
chr10:86194426-86194691
Coord C2 exon
chr10:86194300-86194425
Length
266 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
TAGCCCGCCCTGTCCCGCAGACA
3' ss Score
8
Exon sequences
Seq C1 exon
ACATTGACGAGTGCGAGGACCTCGGAGAACCGATATGCGGGGCCTGGAGGTGTGAGAACAGCCCTGGCTCCTACCGCTGTGTCCTGGGCTGCCAGCCTGGCTTCCACATGGCCCCGACAGGAGACTGCATTG
Seq A exon
GTGAGTGGGGAGGGGGCGTGCGGGCTGGGAGGCCGAGGACAACATCTACTTTTCACGTACCTAGCTAGAAACGATTTTTGCAGCTGTTTGTGTGTTTTCCACGGAGCAGTGCTTACACAAAAATTGAGGAGGACTGTTTAGTTTAGTTTTCTCACCCTGTGTTCAGAAGTTAGTGTTCAGAGACCTTGGTGTTAATGAGCCAGATAAATAAGTATTCCCAGCGAGTAGAGAGCACAGCCTACACTGTAGCCCGCCCTGTCCCGCAG
Seq C2 exon
ACATAGACGAGTGTGCCAACGACACTGTGTGTGGGAGCCATGGCTTCTGCGACAACACCGACGGCTCCTTCCGCTGCCTCTGTGACCAGGGCTTCGAGACCTCGCCCTCCGGCTGGGACTGCGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021957:ENSBTAT00000029274:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.6),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGACGAGTGCGAGGACC
R:
TCTCGAAGCCCTGGTCACAG
Band lengths:
230-496
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development