HsaINT0097553 @ hg19
Intron Retention
Gene
ENSG00000119681 | LTBP2
Description
latent transforming growth factor beta binding protein 2 [Source:HGNC Symbol;Acc:6715]
Coordinates
chr14:74973401-74974013:-
Coord C1 exon
chr14:74973882-74974013
Coord A exon
chr14:74973527-74973881
Coord C2 exon
chr14:74973401-74973526
Length
355 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
TGGTTCCCACTGTCCCACAGACA
3' ss Score
8.59
Exon sequences
Seq C1 exon
ATATTGACGAGTGTGAGGACTATGGAGACCCGGTGTGTGGCACCTGGAAGTGTGAAAACAGCCCTGGCTCCTACCGCTGTGTTCTGGGCTGCCAGCCTGGCTTCCACATGGCCCCGAACGGAGACTGCATTG
Seq A exon
GTGAGTAGGGAGGGAGGAGAGAGAGGAGAGAGGGCTGAGAAAACCTATTTTTCACATATTGAGCGAGACATGATTTTCTCCTGAGGACACGATTTTTTGCAGCTGATTGTAGCTTGTATATTTTCCATCCAGCAGAGCTTATGAAAGATGCCACAGGACTGTGAATGTTAGGATTTTCTTATCCTGGGTTGAGAGGCTGCTTTTCACAGGTCTTGGTGCTAATAAGCCAAATAAGTATTCTCAGCAGAGAACGAGAGAGTGTGCATGCGTGTGAGAGAGTGAGCACACACGCGCGCGCGCACACACACACACACACACACACACATCCTCTATCCTGGTTCCCACTGTCCCACAG
Seq C2 exon
ACATAGACGAGTGCGCCAACGACACCATGTGTGGCAGCCACGGCTTCTGTGACAACACTGATGGCTCCTTCCGCTGCCTCTGTGACCAGGGCTTCGAGATCTCTCCCTCAGGCTGGGACTGTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119681-LTBP2:NM_000428:26
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF062476=Plasmod_Pvs28=FE(28.0=100),PF0764510=EGF_CA=WD(100=95.6)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACGAGTGTGAGGACTATGGA
R:
CCACACAGTCCCAGCCTGAG
Band lengths:
254-609
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)