BtaINT0089002 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019075 | MAP1D
Description
Bos taurus methionyl aminopeptidase type 1D (mitochondrial) (METAP1D), mRNA. [Source:RefSeq mRNA;Acc:NM_001046342]
Coordinates
chr2:24513628-24515029:-
Coord C1 exon
chr2:24514932-24515029
Coord A exon
chr2:24513676-24514931
Coord C2 exon
chr2:24513628-24513675
Length
1256 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
CTTGTATTTTTGTCTTACAGCGA
3' ss Score
10.22
Exon sequences
Seq C1 exon
CCAGATAACTCATCAGAATGGTTTGCAAGTCTGTCCACATTTTGTGGGACATGGGATAGGATCTTACTTTCATGGACATCCAGAAATTTGGCATCATG
Seq A exon
GTAAGAAAGTTAGTTTGGGAGCTGCTTATTGAAAGGAATCAAGATAAAGCAGTTTTGCTCCTGAATCTCTTGCTGCAACATGGAATTCACATTGTCATCATTCCCTATGAGGGTGTGTGTGTGTGTGTGGGGGGGGGGGTCCTATTTAATCCTAACCAGCATGTTACTATGTTACTGAATTAGAGCCTGCCATTTCAATCCCCAAATAAGCTTTGTTTTGCTTTTTGTCTTCTCCTGAAGGGTGATGGCTGGAAGGCACAAGGGATATTTGTCTAGAAAAAGTTACTGAAAACAAAACACCACTGCATCAATGTCCCAGCAGCATGCCATAGGACTGTTTTCTGTTTTTCTTTTTCTACTCCCTTCTCTAACTGCTGACTGTTGTGGTTAAACTTCATTACATCCTACACAGCGTTGACAGCTGATGTATTTAGCAGCGTGTACTCTTTAGTGATTCCTAGATTATACCCAGAGTCTCCCGTTTTTCACTGCCTGGATGTTCTCCCTACAGTGAGAAGGCAAGGGTGGGCCAGAAGGGGTGGGGGATTTGGGTTAGACTAGGAAGCAGTTCTGTGGAGTGTCCCCAAGAGGCATGCATACCTGGACAAGCACCAAAGGAAAGTTGAACCTGGGGCTTTGACCTGTGTGCTTGGGGGTGGGAACAGCCCCATAGAGGAACTACTAGCTGGAATCCACCCCCTGAAAGATCCCTAGACACTCAGCAGGTCAGAACTTCCTTTAGGCCAAAGAACTTCACCTGAGCCAGCTGTTAAGAGGCCCAGGCTAGAGTGCAGAAAGGGCCTCTCAGGTGAGTGCCCACCCAGTGCCAAGCCCTGGAAATATTTCAGGTCACCCTTGTTCTTCCCTCTTACCAACCTGCCCTCCCTTTGTCTCAGTTCCCAAGATGTCTTCCTCTTTCCCTTGGGAGGTGGAAGCCAGCAAACCTCAGAGCAAGTGGCCAGAGCAAGGGGACAGTAGATTGGGGAGCCCAAAAAGTGTCTCAAGCACCTGGGCTGCTCAGCCTTGGTGCACCCATCCTAGGGGCCCTGACCCCAAGCTCAGAAAATGCAGAGGCTGAGGGCCCAGGAGCCCTGTGCTTAACCCCTGGGTAGCCACCACTCAAGATTCTAGCAACCTCTTCCTAAAAGAAAAATAAAATGACCACTTTTTTGTGCAGCCTAACCCTTCTAATCCATTTCTCTCTGTTTTCACCATATCCCATCCCCACGCCCCACACTTGTATTTTTGTCTTACAG
Seq C2 exon
CGAATGACAGCAATCTACTCATGGAGGAAGGCATGGCGTTCACCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019075:ENSBTAT00000025394:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0055719=Peptidase_M24=FE(14.5=100)
A:
NA
C2:
PF0055719=Peptidase_M24=FE(7.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]