DreINT0095299 @ danRer10
Intron Retention
Gene
ENSDARG00000019715 | metap1d
Description
methionyl aminopeptidase type 1D (mitochondrial) [Source:ZFIN;Acc:ZDB-GENE-050522-71]
Coordinates
chr1:30161026-30162501:+
Coord C1 exon
chr1:30161026-30161123
Coord A exon
chr1:30161124-30162453
Coord C2 exon
chr1:30162454-30162501
Length
1330 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
TCTTATTTTCTTTTTTTCAGCTA
3' ss Score
10.69
Exon sequences
Seq C1 exon
CAATATAGCAAACTCAAATGGATTTCGTGTATGTCCATATTTTATTGGCCATGGGATCGGAGAATATTTCCATGGACATCCAGAGATATGGCATCATG
Seq A exon
GTAAGAGTTCAAATTAGGTCTTAGTTTATTTTAAGGTACAATTACTCTCTATCAACAAACAATTATCCAAACCACAGTGCGATAAACATTTGCAATACTTTTTCATAGGCACTTGTACACATCACTTTATAACTTGTATTTATAACAAATCTGCACATACAATTCATCATCTATAGCTCTTTTATCTAATTGCATCTCTGTCTAAGGTTTGTCGCCTTTTCTCATACTTATTTTCGTGTTGTCACTTGTCACTTTATGTACAGTGGAAGCTTCTGTAGTCAAAACAAATTACTTGTGTGTGTTAAACCGATTCTGATTTTGATTCTGATTAACTATGACTTTTAGATCAATAAATGACTAGTTTGCTGCTTAATAATAGTTAGGTAGTAGTTAGGTTAAGATATTAGGTAAGGATTAGGGATGTAGAGTAAGATCAAACTTTAGAAGTACTAATAAGCTGCAAATATTTTTATAGTAAACAGGTTATAATGAGCCTTTAGTTAATGTAAATTGATATTTAAACTAAAGTGTTAACTAAAATTATAAAATGTATAATTTATTACTCAATATTTAGAATTTTTATCTTGAATAACTTAAAGAGATTGTTTACTTTTAAGTCTTCATATGTTGGTTACTGTTTTTTTTGTTTTTGTGGAAGACATGAAAAGATACTTAAAATATGTGGAGGTTAATAGTACTGTATGTAATTTCCATTTATTTATTGAAATTTCATAGTGATGGAATGTTAGTGATTGGATGGCTTTGAAAAAGTAGTAAAAATAAAGACCTGTTTAAAATGATTTAAGACCTACAACACAATATTTAAGCGAATTTAAGACTTTTTAAAGCCTACATTTTTTACATTAAGACTTTTTAAGACCCCACAGAGACCCTGTAATAAACAGAAACACCCCAATTACCAAGAAACTGTTCATTCTTTGTTTATCCAATATTCCTTATTATCTTTTGAGTTATCCTGAGGAAACTTTACTTCAAAATGTTAAATAAAATGTGGTGATACATTGCAACGGTTTTTAAATTAAAAACAATGCCAGACATTTCCATTGAGTACTTTAGTTTGAATTAAACTTCTCAATAAACAAATTTTAAAAATCCTTTCAGAAAGAATGAAGAGATCATCTATGTTAGCATCTTTACAGTTTATAAGCTTTTGCATATGTTAATTATATTGTACTTTGTTAAACCATTTAAATGTTGTTAAAGTGGTGATTTTTAATGTGGTGATTAAGGTGTTTTACCATTATACTGAATGGAATACTTGCAGTGGAGTAGAGTTCATTCAGTACTGTTCTTATTTTCTTTTTTTCAG
Seq C2 exon
CTAATGACAATGACCTCAAGATGGAAGAAGGCATGTCCTTCACCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019715:ENSDART00000022841:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.118
Domain overlap (PFAM):
C1:
PF0055719=Peptidase_M24=FE(14.5=100)
A:
NA
C2:
PF0055719=Peptidase_M24=FE(7.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]