GgaINT0047910 @ galGal4
Intron Retention
Gene
ENSGALG00000009513 | METAP1D
Description
methionyl aminopeptidase type 1D (mitochondrial) [Source:HGNC Symbol;Acc:HGNC:32583]
Coordinates
chr7:17343214-17343759:-
Coord C1 exon
chr7:17343662-17343759
Coord A exon
chr7:17343262-17343661
Coord C2 exon
chr7:17343214-17343261
Length
400 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGC
5' ss Score
9.89
3' ss Seq
GTTTTTATTTTCTTTTCTAGCCA
3' ss Score
9.85
Exon sequences
Seq C1 exon
CTCTGTGGCGCAGAGGGGCGGCTTCCAGGTGTGCCCCTTCTTTGTCGGCCACGGCATCGGGTCGTACTTCCACGGGCACCCCGAGGTGTGGCACCACG
Seq A exon
GTAAGCGGCCCCCGACCGGGGCACCGTCTCCTCCCGCTGAGAGGGCTCCGGCGACGGAGGTGCGATCCGAGCCCGGGGGGGGAATCTCGGCGGGCGATCCTCCCGGACATGTGCCGGGATGCGAGGAGCCGTCGGGGCGGGGGCTGGGGGGAAAAACGGCGGCGGGAATGGGAAAGCCCCGGTGGGGCCGGAGGGCGGCGGGGCGGGCCGCGGGGACAATGAGAACGGGCGCTTGGATCGGGTTTTCGGTCGGGGCCGGCGTGCGCGGCACCTGTGAGCCGGAACGGGTTTTGAAACCGAGTGCTGGGCGCTGTTACCAACAACAACAACAACGAAAAAAAAAAAAAAAAAAGGTGAAAAGAGACAACAACTATAAAAGCGTTTTTATTTTCTTTTCTAG
Seq C2 exon
CCAATGACAGTGATTTGTTAATGGAGGAGGGAATGGCGTTCACAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009513:ENSGALT00000015487:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0055719=Peptidase_M24=FE(14.5=100)
A:
NA
C2:
PF0055719=Peptidase_M24=FE(7.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]