BtaINT0089962 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018473 | MARCO
Description
macrophage receptor with collagenous structure [Source:HGNC Symbol;Acc:HGNC:6895]
Coordinates
chr2:71130084-71131603:+
Coord C1 exon
chr2:71130084-71130182
Coord A exon
chr2:71130183-71131558
Coord C2 exon
chr2:71131559-71131603
Length
1376 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
CATTTTTTTCCTCATGACAGGAG
3' ss Score
8.01
Exon sequences
Seq C1 exon
GCCTTTCGGGCGTGAAGGGAGAGAAGGGAAGCCCAGGCCTGGGAGGCCTCAAGGGGGCACCTGGACCAACTGGCCAAAAGGGAGAGCCCGGATCGAGAG
Seq A exon
GTAAGGTCTCGGCTTCTGACATAAGAGTTCAAAGGAGAGGCCTGTTATAAGGAGTTGGGGGTGGTTTTCAGAACCAGAAGGCTAGAGGCTTAGTGGTTCTGTGGAGAAGTCTTGTGCTGGGGTTGCCCTCGGCCCGGAGCTTACAGAGGTGAATAAGGCACAGCTGGGCACTCAGCACAGCAGGTGACAATGTGCTGGACCACGCCCAGCCAGGCCCCCGGACCATGCAGTCTCCGTGACTGACCTCAGGAGAGACCTCCCACTCCATGCCTCTTGAATGTCTTTCTCTAATCTAGCTTAAGTCCTTCCTGCTGTAGCTCAGGCCCATTTCTTCTTGCTCAACCACGGAGATCCATGGCATATCCAGTCCCCATGATGCCAGGGGGCCGGCAAAGATGGAGGAGAGAGTCTGACCCCCACCACTCCTCCCCACTGCTGGCAAAGGAGAGCATGGGGTTCCTGACTTGGTTTCCTTCAACTGTGCCATTTTTTTTCCTCATGACAGGAGCTACTGGGCCACAAGAGCCAAGGGAGAAAAAGGTCAAAAAGGTAATTTGCTATTTCTGTTCTGTTTAACGTATGCTATAGAGGCTACTCTGTACTTGAAAGTTGTATGTGTTCTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAAAGTAGAGCAGAGCATCTGATGGCGGTGGTCTCTCTCTTCCCCAGGCCTTTCGGGCGTGAAGGGAGAGAAGGGAAGCCTAGGCCTGGGAGGCCTCAAGGGGGCACCTGGACCAACTGGCCAAAAGGGAGAGCCCGGATCGAGAGGTAAGGTCTCGGCTTCTGACATAAGAGTTCAAAGGAGAGGCCTGTTATAAGGAGTTGGGGGTGGTTTTCAGAACCAGAAGGCTAGAGGCTTAGTGGTTCTGTGGAGAAGTCTTGTGCTGGGGTTGCCCTCGGCCCGGAGCTTACAGAGGTGAATAAGGCACAGCTGGGCACTCAGCACAGCAGGTGACAATGTGCTGGACCACGCCCAGCCAGGCCCCCGGACCATGCAGTCTCCGTGACTGACCTCAGGAGAGACCTCCCACTCCATGCCTCTTGAATGTCTTTCTCTAATCTAGCTTAAGTCCTTCCTGCTGTAGCTCAGGCCCATTTCTTCTTGCTCAACCACGGAGATCCATGGCATATCCAGTCCCCATGATGCCAGGGGGCCGGCAAAGATGGAGGAGAGAGTCTGACCCCCACCACTCCTCCCCACTGCTGGCAAAGGAGAGCAGGGGGTTCCTGACTTGGTTTCCTTCAAACTGTGCCATTTTTTTCCTCATGACAG
Seq C2 exon
GAGCTACTGGGCCACAAGGAGCCAAGGGAGAAAAAGGTCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018473:ENSBTAT00000024586:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]