HsaINT0099938 @ hg38
Intron Retention
Gene
ENSG00000019169 | MARCO
Description
macrophage receptor with collagenous structure [Source:HGNC Symbol;Acc:HGNC:6895]
Coordinates
chr2:118991777-118992476:+
Coord C1 exon
chr2:118991777-118991875
Coord A exon
chr2:118991876-118992431
Coord C2 exon
chr2:118992432-118992476
Length
556 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
GGGTTTTCTCCTCATGACAGGAT
3' ss Score
7.8
Exon sequences
Seq C1 exon
GCCCTGCAGGTGTGAAGGGAGAACAGGGGAGCCCAGGGCTGGCAGGTCCCAAGGGAGCCCCTGGACAAGCTGGCCAGAAGGGAGACCAGGGAGTGAAAG
Seq A exon
GTAAGGCCTCTGCATCTGATTCCTTTGTTCTTAGGACTGTGCTTTACAGCCAGTTCTGTACCTTAAAATAGGAAAGGCGCTGTTTTAAGAGTTCTGGGGATTTTCAGAACCCAGGAGGGTAGAGGTTTATTTCCTTGATTGACAAGTCTTGTGCTGGGGCTTGCCCTAGGCATGGAGCACACAGCAGCGGGTTAGGCGCAGCTCTAGCATCCAAGGCAGGGGCGTGAACATGCACTTGAGCCATGCCCCACGACCCAACACTCCTAGGCAGTTTCCATGAAGGAGATGAGCCCATCCCACTCCATATCTCTGACCAGACCAAGCATCCCTCACCAATCTAACTTCAACCCCTCTTGCTGTAGCTCAGGCCCGTTTCTTCCTGCTCAGTCATTGACACCCGCAGGACATCCCATCCCCATAATGCCAGGCCACAGGCGAGACCCACGGAGCATCTGACCACTCCCAACCCTCCACCCGCTCCCCACTCATGCAAATGCAGGCAAAGGCGTCCTGCCTGGGTTTCTTTCAAACCGTGTGGGTTTTCTCCTCATGACAG
Seq C2 exon
GATCTTCTGGGGAGCAAGGAGTAAAGGGAGAAAAAGGTGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000019169:ENST00000327097:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(52.4=100)
A:
NA
C2:
PF0139113=Collagen=FE(23.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development