RnoINT0089747 @ rn6
Intron Retention
Gene
ENSRNOG00000049303 | Marco
Description
macrophage receptor with collagenous structure [Source:RGD Symbol;Acc:1589662]
Coordinates
chr16:85118044-85118606:-
Coord C1 exon
chr16:85118508-85118606
Coord A exon
chr16:85118089-85118507
Coord C2 exon
chr16:85118044-85118088
Length
419 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
GGGTTTTCTCTTCATGACAGGGT
3' ss Score
7.43
Exon sequences
Seq C1 exon
GTCTTGTAGGCAGAAAGGGAGACACTGGAAGCCCTGGGCTGGCAGGCCCCAAAGGAGAACCTGGACGAGCCGGTCTGAAGGGAGAACCTGGGATGAAAG
Seq A exon
GTAGGTGCTACTTTTGACATTGACTTAAAGTTATGGGTCTTCAGAACCAGGCTACTGGAGGTGTCTTTATTGAGTTTCCAAGTTGCATGCTAGGAATTATATTGGAAAAGTATAATCAAGTTTCCCCAGGATGCATATAGCTTTCCCTTCTGTGCTCTACCTCAGACAGCACCACAATCAAATGGGTCTTTCCATAAGTCTTGTTGCTTCCTGAGTCTCTCTCACTAGCCTAACTCCCACCCTTTCAATACATCTGAGGCCTGCTTCCTCTAACTCAACCACGGGTGCATAGATTGCTATCCCCAGAGATCCCAGTCACAGGCAGAGCTGGAGGACAGAAACTGACCCCTCATCTGATGTGGGGAGAAGGAGTGAAGAAGATCGTGGATCAAAGTGTGTGGGTTTTCTCTTCATGACAG
Seq C2 exon
GGTCTTCTGGCCAGCAAGGACAAAAGGGAGAAAAAGGTCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049303:ENSRNOT00000075773:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(7.6=17.6),PF0139113=Collagen=FE(45.8=100)
A:
NA
C2:
PF0139113=Collagen=FE(20.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]