BtaINT0090370 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019592 | MBD5
Description
methyl-CpG binding domain protein 5 [Source:HGNC Symbol;Acc:HGNC:20444]
Coordinates
chr2:47825070-47830258:-
Coord C1 exon
chr2:47830050-47830258
Coord A exon
chr2:47826279-47830049
Coord C2 exon
chr2:47825070-47826278
Length
3771 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTC
5' ss Score
7.04
3' ss Seq
TTCCTGTCTATTTCTTTAAGGTG
3' ss Score
9.19
Exon sequences
Seq C1 exon
GTGACATGCCCTCAATAAACAGTACTTTGAATAACCATCAACTGACTCATCTACAGTCGCTGTTAAACAACAATCAGATGTTTCCTCCAAATCAGCAGCAGCAGCAACTTCTTCAGGGGTACCAGAATCTCCAGGCATTTCAAGGACAGTCCACAATTCCTTGCCCAGCTAACAATAACCCCATGGCTTGTCTGTTTCAGAATTTCCAG
Seq A exon
GTACTCTCCTTTCCTGGGTTACTTTAGTAGAAAACAATGTTTACTACTTGTTTTGCTAAATTGGGAGAAACAGACAAAAGAAGGTGATTATGTACCTTTTCACCTCTACTTACTATTATTCCTCAGTAATGTTGTTAAAGTTTCAGTGTTTTTGTTTGAAGCATTTTATTTTGTCTGAAGCATCTCAGTGGTCCTTTAGAAGTTGTTATTAAAAACTGATCATGTTACCCTCTTAAACTCTTGTGGTTTCCCATTGCTCCCAGGGCTTCCCTGGTGACTCAGTGGTAAAGAATCCACCTACCAATGCAGGAGACTGGGGTTCCATTCCTGGGTCAACAAGATACCCTGGAGAAAGAAATGGCAACCCACTTCTGTATTCTTGCAGGAAATCCCATGGACAGAGGAGCCTGGTGGGCTATATTCCATGGGGTCGCAAAAAGAGTTGGATACAACTTAGCAGCTAAACAACAACATTGCTCCCATGATTAAAATCCACATCCTTAACGTGTTTACCCTGCCTCACTCTCCAGCACCAGTTCACACCACTCTCTCCCTGGCTTCAGCCACTTGGTCTTCTTTTAGTTCTAAAAACAAATAAACTCCTGATAGATTAAGGAGCTGGATGGAAAGAGGAACATTAAATAAATACATGAAGAAAATATAGAAGATTTTTAAATAATCTTAGGGTAGAAAAGGCTCTTTCAGCAAGGCACAACCAAGGAGTCAAAAAAGAGGTGACAGAGTTGAATACATAAAACTTTAAATCTGTACGATTAAAGATATTCTAAACAAAGTTGAAGACAGGTGGCAACCTGGCAGAAGTTACTGGGTTGGCCAGAAAGTTTGTTCATTGGCCACATCCAAACAAACTTTTGGCCAACTTAATACATGCATAATAATAGCAACTAATTGCCATTCATAATATTTTAAAAGCTCCTACAAATTAGGAAGAAAAAAGAATCAATTAGAAAAATGAGCAATAGAAATGAACAGACATTTCAGAAAATTAAATAATAATTAGTAATAAACATGAATAATCAGAATTATACAAATTACAACATTACTATGTCCATCAGATAGTTATATCCTTTGCTAACAGAGGAGTGGGGAACTGGATTCTTTCAGATATATTGTTGGTCTGATTGTATGCTGACATAGTCCTTTTAGAGGGTGATTGATAGTTTATCAATTTTACACACACACACACATACACACACATATATGTGTGTCTATATATGTGTGTGTCCTTTGACCCACAAGTTCAACTTTGATATTTTGGAGAAATCAAGGCACAATCTAGAATGTTTTGTTGCAATTTGATTTGTGGTGTCAAAAATTAGAAACCACTTAAGCAACCATCAGTAGGAAAATAGTTAAATATTGAGTATGTTTTGCTATTTTCATCTATCTAGTAGATTCGAAGATTAGGTAGGTTTATATAATCTGATATAGACAGATCCACAGATTACAGAACTCCAACACTGTTGTATTATAGAACAGTACTAAAATATAATACCACTTATATGAAAAAAAGAAATGAGGCAAGGGGAAAGGAAGGTGTGAAAGAAAGAAGGGAAACTAGATGTGCAGCTGCACACTTAAGGTATTAAAAACAAGTCTATGAGGATGTATTCGAACACTGATCACTTTTGAGAAAGAAACGGAATCAGAGTGGGATACAAAAGTATAGATTTGGGTGGGAAAGTGATGAAGAAAGCTTTTCTCTTTTGGACAATGAAAAAATACTCATATAATAAAATAATTTAGAAGGGAAGAATAAGCTCTCAACCATGTCAATGAGTAAATAAGTAGGTAAAGCCTGAAGGGAATCCATTAGATTTAGCAGTTAGAACAACAGTAGCTTGAATGCAGTTTTTGCGGAGTTGTGGGAGCAGGAGCCAGATTGCAATGGATGGAAGAATGAAAAATAAATTAGAGTTTGGATTACTCTTTTTAAAACTTTTTAAAACCTAACTACAAAGAACATAACAGAAATAAAATAGTGCCCCAAGGTAGGCATAGGTTGAATGCAAACTTTTATTGATAAAATATGGAAGCCATGCACATAGTTGAATGCTAAAGAAAAGAGACAAAGAAAAAAGTAGAAGAGATTGAACATAAAGAAGAGACGGGGTTAACAGATAAGGCAAGATCCCTGAGGAAAGGCTTGGTATCCAGAGCATAAACAGAGGACTTACTCAGAGGGCAGAGGGAGTGCCTCTTACACTGGGAAGCGGGACAGGACCAGGGACACTGTGCAGGGAACAGTGTGCTGCCAGAAGGCAGGGAGTAGCCAAGTATAAGAATAATGAGAACTCCTAACCTATAAACTTGATTATCTCTGTTAAGTAGGGTCAAATACTAAGAGTAATGTGGGAAATAGTATAGCAGCTGGCTTGAGGAAGTGGATAAAATCTGAATAGTTGTGACAGAGAGTGATACCTAACCAGAGGATCATAGGATTGATGGGAATACAAACCCCCAGCTGAGATTGGAAGCCATAAGTTCCTATGGATAGATACTCAGCATCCTCACTGTGCATACAGATACAGAAGGCAGGCAGCTAAATTGACCCAAGATTGGAATTTTTATCTGGTAGGTGTAGATAAGGGGAGAATGGCAGGAAAGTAGTTATGTTGCTGATGGATCCCAGGTTCTGGTTTAGCAGGAAAAGATGTAAAGACAGGAAGTGAGTGATCGTGGGTCAGTGAAGCAGGGGGTGGGGGGACAGGAAATCCAAAGTATCAAGGTTCTGGAGAGCAATTCTTAGCTGGGGTTGGTGAAACTAGAATAACCTGTGGACTTTTTCAAAGTGCACTCATCATGCCCATGATGAGCATTGATACTCTTCACTGGCCATTTCCTCCCATCACCTCTTCCCAATGAAGCATCACCTCCGAGGCCACTGTTGTCACTGTTGGCAGCGTGGGAATGTCCCTCAGGCAGTTACCCAGTAAGGGTGAAGAGCTGGTGTTACTACCCTACCTAAAGATTTCAAAAATCCAGTGTCATCTCAGAAATAGTTTGGGGACTTCCCAGGTGGTACTAGTGGTAAAGAATCCTCCTGTCAGTGCTGGAAATGCAAGGGTCACGGGTTCCATCCCTGGGTCAGAAAGATCCTCTGGAGTGGGAAGTGGTAACCAAGTCTAGTATTCTTGCCTGGAAAATCCCATAGACAGAGGAGCCTGGCAGGATACAGTCTGTGGAGTTACAAAGAGGCAGACAGGACTGAGCACAACTCAACAGAAATAGTTTCATTGTTAAGAAAGGGGTGTATATATATATATATTTTTTTGTTTTTGTTTTCTATTTCACTTAATTCAGTAGAAATATCAATGAGTTAGAGATCATTTTTAAAACCTGTTTCCCTTTTTAATGTGAGCAATGCTGGTGACAGACTTGTTTCTCTCTTTGAATTCCAAGTTGAAAACCTGTAATGACACTAAAAACATGGAATCATCGCCTGGAAACCTTTTGTGTCCAACCACCTCAACTGTAATTTTTCCACAGAATGTTTAGTAATATGATTTTTTTTTAAATCTGTTATATGATTCCAATCAAAGAAACAGTACCCAAGTATAATCAAGACATGTCTTTCTATACAGAGTGACTTCTGATTTCATTTTTGAGTCTTATTCTGTCTTTATATGGCCTTCCTTGTTATAGTCATTGGTCTTCTGGTAAATCTTAAAATTACAGTCTTTCTCTTTAAGGACTTGAAATTTTTTTTTCTCTCTCTCTGTCTCACTACTTCCTGTCTATTTCTTTAAG
Seq C2 exon
GTGAGAATGCAGGAAGATGCAGCTCTCCTAAACAAAAGAATAAGCACTCAGCCGGGGCTCACAGCACTTCCCGAAAATCCAAACACTACACTTCCACCTTTCCAAGACACCTCTTGTGAGTTGCAGTCGAGGATTGACCCATCTCTAGGTCAGCAGGTGAAGGATGGCCTCATCATGGGGGGCCAAGGCGATGCTTCCGTAGATGCTATTTACAAAGCAGTCGTGGATGCAGCCAGCAAAGGGATGCAGGTTGTCATCACCACTGCTGTCAACAGTACAACTCAGATCAGCCCCATTCCAGCTCTGAGTGCCATGAGTGCCTTCACTGCTTCCATCGGTGACCCATTAAGTCTCCCCAGTGCTGTCAGTGCGGTCATTCACGGACGAAACATGGGCAGTGTGGATCACGATGGGCGGCTGAGGAGTGCGAGAGGGGCTCGGCTGCCTAGCAGTCTGGACCACGGGAAGAACTCCAGCGAAGGAGATGGCTTTGAATATTTCAAATCAGCAGGTTGCCACACATCTAAAAAACAGTGGGATGGGGAGCAAAGCCCTGGAGGGGAGCGAAACAGGTGGAAGTGTGAGGAATTTTTAGATCATCCAGGCCACATCCACAATAGTCCTTGTCACGAAAGGCCCAACAATGTCTCTACACTGCCATTTCTGCCTGGGGAACAGCACCCAATACTGTTACCACCGAGAAACTGTCAAGGGGATAAGATTTTGGAGGAGAATTTCAGGTATAATAACTACAAAAGAACTATGATGAGTTTTAAGGAGAGACTAGAGAACACTGTGGAAAGATGCGCACACATTAACGGGAACAGATCTCGGCAGAGTCGGGGCTTTGGAGAGCTGCTGAGCACCACAAAGCAAGACTTTGTCCTAGAGGAGCAATCTCCGAGCTCCTCCAATAGTTTGGAGAGTTCTCTGGTCAAAGACTACATCCATTACAATGGAGACTTTAATGCCAAAAACATTAACGGGTGTGTACCTAGCCCTTCAGACGCTAAAAGCATTAGTAGTGAAGATGACCTAAGGAACCCAGACTCCCCCTCTTCAAATGAATTGATCCCTTATAGGCCAAGGACGTTCAACGTTGGCGACTTGGTCTGGGGCCAAATCAAAGGACTGACTTCCTGGCCTGGAAAATTAGTCAGAGAAGACGACGTTCACAGTTCTTGTCAACAAAGCCCCGAGGAAGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019592:ENSBTAT00000061479:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.550 A=NA C2=0.490
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0085512=PWWP=PU(46.3=9.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]