MmuINT0096251 @ mm10
Intron Retention
Gene
ENSMUSG00000036792 | Mbd5
Description
methyl-CpG binding domain protein 5 [Source:MGI Symbol;Acc:MGI:2138934]
Coordinates
chr2:49274563-49279783:+
Coord C1 exon
chr2:49274563-49274774
Coord A exon
chr2:49274775-49278580
Coord C2 exon
chr2:49278581-49279783
Length
3806 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTT
5' ss Score
8.17
3' ss Seq
CCCTCCTCTACTTATTTAAGGTG
3' ss Score
8.08
Exon sequences
Seq C1 exon
GTGATATATCATCCATAAACAATTCATTGAATAACCATCAACTGACTCATCTACAGTCGCTACTAAACAGCAATCAGATGTTTCCTCCAAATCAGCAGCCGCAGCAACACCTTCTCCAGGGACACCAGAATCTCCAGGCCTTCCAAGGACAACCCACAGTCCCTTGCCCAGCTAACAATAACCCCATGGCTTGTCTGTTTCAGAACTTCCAG
Seq A exon
GTACTTTCCTTCCACACATGACTTTAGCTGGAAACAATGTCTGGTTCTATTGAAATAGAGAAGGAATGAAAAAGTACCCTTTAGAGCCTATTGACAGTTATTTCTTAATATTGACTATTGTTAAACATCCCAGTCCTTTCTGTAAAGATAATTATATTTTGTATAAGGCAGTAGTTTTTTTGGAAATGTGAGTGAAAACTGATAGTGTTACCCTCTTATGCCCTTTTGTGCCTTGTGCACACATTACTGTCATAATTAATATACATTTTCTTCCATGTTAGCTTCCACTACCCTCTCCTCCTGATTTAGGCCACATGGCCAACTACTTCTACAAAGGTGACTAATATGCTAAAGATTATATAGAAAGAGTTATGCTATATCAGTGTAAAAAAGAAACATACAATATTTTTTTAAAGATGTAACACTTTAAAAAACAAACAAAAGGGTGGGGCTCACTATGTAGTCCAAGCTAGCTAGTCTTGAATTTGCACCCTCTTCCTCAGACTCCCTTATGCTGGACTTATAGACATACACCACCACAGACTATAAATAATAAAACAGAGGAAGCTATTTAAGCAAGATATAAAACCATTAGGTTAAAAGAAAAATATGTAACTAATACAAAAATATTAATTTCTATATGATCAAAGTTATAGAAGTATCAAATGTCAGGAAATATATACATAATGCATGCCATATATGGACACCCTTCATATTAGTATACTTCCTATAAATCAAGAAGGAAAGGATAATTGACTAGAAAAATAAGGAATAATTATAAACAGAGAGTTCACAGGAAATGAAATATTAATTATTAATATCATGAAAAGAATAACCAATATGTCCATTACTATGTATTTCCCATTGATGGCATGCACTGCTGGTACAGGTATAAAGGAATCAGCACTTTGATTTTATTGTTGGTCCATATGGATTCTGGTTAAGCTTTATTAGCTTTTTTGTTCTTTTTGATAGAGTTCAAAGCTAAGTGAGGCCGTGTACAAGCTGTGGGAATGCTCTACCACTGAGCTATATATCCAGCCTCGCTCATTTCTTTTGGAAGATAATTTGGTAGTTTATCAAGTTCGTAAGCATATTTGTATATATGTGTATATGTGTGTCTAAACACATATCTGTTCACTAGCCCAGACATTTAATTCACATATGTTTGACTTAAGAGACATCTTCACATGTGAATAGAAGAGCACATAGCAGAGCATTCATTACAACATGAGTCAGAAATTAAGAGGCTCTAAGGTATTGATGAATCAGAAAATAATTTTATTACATAATATCCATCTATCTATAAGCTTAAAAGATTAGGTAGTCTTATTCGCTCAAATATGCTGAGACCTCCAAGACTACGAAATCCTGACACCATAGTATTAGCAGAAGAGTGGTGCAGTACATTTCCTCATACCGTGAAAGGGAAGGATGGAGAAGAGAAACTAGGTATTGCTACATGCTTTAATAGTTTAAGTGTCTGCCAGGGTGCTCTACAGCCCTTCTTTCTTTCTTCTGAGAAAGGAAGTAAGATAGAGTAGGGCAGAGAAGTGTTGGTTTAGTAAAGAATGGTGATGAACACATCTTTCACCTAGAATGAAATATCCACACATACATAATAAATTAATTCATAATGGAAGATGTGCATACCTACAGCATCCAGAAAGCAAGCTAAAGCCTGCAGCCAGCTCACTGTGCTGTTAGGACATGAGAGTAACTCCGGGAGAATACAGTTTGGGGAAGTGGTAGAAGCAGGGTCATATTGCAATGGTCAGAATGACAAATAGAGACATTGAGACTTGTAAAATGAGGTATTGCTTCAAAAACCAAACTGACACTGTGAAGAGCAGGGGGCCTGGGTTAATGCTCCAGAGGGTACACTGGGTTGAGCACTGACCTTCTACATAGGGAGGCATGAACATAATCATATGCTAAAAATAAAGAGCCAAAAAAGTACATGAATGTAAATATGAAGAAAGGGAAGTACAGAGCTTTCTTCCATAGAGCAGATGGAAAACTGGACAAAATGTAAGCAAAGCATAACTTATGAGAAATATAAGCTATTAAGGATCAAGAACTGTCGGAGTGTGACAGATCTTACCATGAGCTTCATTTTCTCTGGTAAGTAGGGCTATCTACCAAGAATAGGTTAGGAAATGATATGGCAATCATCTTGAAGAAGTACAGAGAGAGTGTTGTGGAGAAAATGATTCCTGACTGGAAGGTCACAGGACTGAAGGAGCAGCAACAGGCCAGGTTGGAAAACATAAATATCTATTCATAAAATACTTTACCTTCCTGTGGATGTAGACAAAACCAGAATTTAAAGTTATCTAAGATTTAGATTTTATCTGGCAAGTCCAGACAAGGGGGCGGGGGGTAGTAGCAAAAGAGTGGCTGATGTGCCATTGGATCCTAGGTGCTGGTTTAGTAAGAAAGTAAGTAGAGACCAGAGGGGAGTGGTCTATTGGCCAGAGATGAGTAGAAATTAAGATTGATAACTAATGATGATATTAGACCTAAAATCTGTCACAGTATTTCTTATACAGTGTTTGCAAAATTAGAGAAGCCATAGAATTTTTTTTCCAAACTGCGTTAATGCTTCCTATACAGACATCCCTTCCCCTTGCCTCTTCCTAACGGATAGTCACTCTATAGACAACCATTGTTCTTTGTGGCAACATGAGGATGCATCTCAGGAAATGGTCTGATAAGAATGAAGAGTAGGAATTAATACCCAGTCTAAAGACTTCAACAAATATCCTGTCTGGTTAGTGAGATAACTAAGAGGGCGTCTTAGTTAGGGGTTTACTGCTATGAAACAGATACCATGACCAAGGCAACTCCTGTAAGGACAACATTTAATTGGGGCTGGCTTACAGGTTCAGAGGTACAGTCCATTATCATCACGGGAGGAACATGGCAGCATCCAAGCAGGCATGGTACAGGAGATGCTGAGAGTTCTACATCTTCATCTGAAGACTGCTAGCAGAGTCCTTGCTTACAGGCAGCTAGGATGACAGTCTTAAAGCCCATACTCACAGTGACACACCTACTCCAACAAAGCCACACCTGCTCCCACAGGGCCATACCTTCTAATAGTGCCACTTCCTGGGCTAAGCATGTACAAACCATAACAGGGTAAAGGCTCTTTTCTCACAAGCCTGGCAACCCAATTGTCCTCTGATCTCCACACATGCACCATGACATGTGTGCCCACACACATTGTATACACAAAATAAATATAAATAAAAGTTAGCATGTGTAATGTCATACCAAAGTAATTCATTGTTAGAAAAGGAATTTATTTTATTTTATCTTATATTTAACTTAGTTAAATTAGTTATCAATCTTAAGTTTCAAATGCCTGTAAGACCATTGAGCAAACACATGGAAACACCTTGTGTCCAACTACCTCAAGTTTAATTTTTCTAGAAAACACTTGGCAATGATGAGTTTAAAAGATCTGTTGAACTGCTTCAACTAAAAAAAAATTACCCAAATATAAAAATACAGTCAATGTGTGAGGTTTTCTATACAGAATGGTTTTTTCCTTTCATTTTTATTCTTGTTCTTTGTGCTTCCTTGTTTATCTTTTGGTGAATCTTTAAATTATGATATTTTTAAGGTCTTTACATTCTTCTCTTCTCTCCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCTCTCTCCCTCTCTCTCCTTTGCTCTCTCTCCCTCTATTTCCCTCCCTCCCTCCCTCCCTCTCTCTTTCCCTCCTCTACTTATTTAAG
Seq C2 exon
GTGAGGATGCAAGGAGATGCAGCTCTTCTAAATAAAAGAATAAGCACTCAGCCTGGGCTCACAACACTTCCTGAAAACCCAAACCTTGCACTTCCACATTTCCAAGATACACCCTGTGAGCTGCAGCCAAGGATTGACCTTGGTCAGCCTATGAAGGACGGCCTCGTTATGGGTGGCCAAGGAGATGCCTCCGTAGACGCCATTTACAAAGCAGTTGTGGATGCAGCCAGCAAAGGAATGCAGGTTGTCATCACCACTGCTGTCAACAGCACGACTCAAATCAGCCCTATCCCAGCCCTGAGCGCCATGAGTGCCTTCACTGCCTCCATTGGTGACCCATTAAATCTGTCCAGTGCTGTGAGCGCTGTCATCCACGGGCGGAACATGGGAGGAGTGGATCATGATGGCAGGCTGAGGAATGCGAGAGGGGCACGGCTACCCAAGAACATAGACCATGGGAAGAACTCCAGCGAAGGAGACGGGTTTGAGTGTTTCAAGTCAGCGAGCTGCCACACATCCAGAAAACAGTGGGATGGGGAGCAAAGTCCCAGAGGGGAGCGCAACAGGTGGAAGTATGAGGAGTTTTTAGATCATCCAGGCCATATCCACAGTAGTCCTTGCCACGAAAGGCCCAACAATGTCTCTACACTGCCATTTCTAGCTGGGGAACAGCACCCGATACTGTTACCACCAAGAAACTGTCAAGGTGATAAGATTCTGGAGGAAAATTTCAGGTATAATAATTACAAAAGAACTATGATGAGTTTTAAAGAGAGACTAGAGAGTACTGTGGAGAGATGTACACACATTAACGGAAACAGACCTCGTCAGAGTCGGGGCTTTGGAGAGCTGCTAGGCACTGCAAAACAAGACCTAGTTCTAGAGGGGCAGTCTCCGGGTTCTTCAAATAGTTTGGAAAGTTCTCTGGTCAAAGACTACATCCATTACAATGGAGACTTTAATGCCAAAACCATTAATGGGTGTGTGCCTAGTCCCTCAGATGCTAAAAGCATTAGTAGTGAAGACGACCTACGGAATCCAGACTCCCCCTCCTCACATGAGTTGATACACTATAGACCAAGGACGTTCAACGTTGGCGACTTGGTCTGGGGCCAAATCAAAGGACTGACTTCCTGGCCTGGGAAATTCATAAGAGAAGACGACGTTCACAATTCATGCCAACAAAGCCCCGAGGAAGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036792:ENSMUST00000047413:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.662 A=NA C2=0.482
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0085512=PWWP=PU(46.3=9.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types