RnoINT0090110 @ rn6
Intron Retention
Gene
ENSRNOG00000027596 | Mbd5
Description
methyl-CpG binding domain protein 5 [Source:RGD Symbol;Acc:1562961]
Coordinates
chr3:33467689-33473531:+
Coord C1 exon
chr3:33467689-33467909
Coord A exon
chr3:33467910-33472322
Coord C2 exon
chr3:33472323-33473531
Length
4413 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTT
5' ss Score
8.17
3' ss Seq
CTCTCTCCTATTCATTTAAGGTG
3' ss Score
8.83
Exon sequences
Seq C1 exon
GCGATATGTCATCCATAAACAGTTCTCTGAATAACCATCAACTGACTCACCTACAGTCACTGCTAAACAGCAGTCAGATGTTTCCTCCGAGTCAGCAGCAGCCGCCGCCGCAGCCGCACCTTCTCCAGGGACAGCAGAATCTCCAGGCCTTCCAAGGACAACCCACAGTCCTTTGCCCAGCTAACAATAACCCCATGGCATGTCTGTTTCAGAACTTCCAG
Seq A exon
GTACTTTCCTTCCACACATGACTTTAGCTGAAAACAGTGTCTGCTTTTATTGAAATAGTAGAGAAGGAATGAAAAGGTACCCTTTAGAGTCTACTGACAGTCACTTCTTAATACTGAGTATTGTTAAACATTCTGGTCTCTTCTGTAAAGATAATTTTATTTTGTATAAAGCAGTAGTCTTTTTGGAACTGTGAGTAAAAGCTGATAGTGTGACCCTCTTATCCCGTTTTGTGCCCTGTGCCCACATTACTCTCATAATTAATAGACACTTTCTTCTATGTTAGCTCCCACTCCCCTCTCCTCCTAGCTTAGGCCATGTGGACAACCATTTCTACACTTCTACAGAGGTGCAATGTTTTATGAATGGAAGAAAGAAATATGCAATAACTTTTAAAGATGTAACACTTTAAAAAACAAACAAAAGGGTGGGGCTCACTATCTACTCCAAGCTGGTTAGTCTTGAATTTGCACCCTCTTCCTCAGACTCCCTTATGCTGGATGTACAGACATGCACCACCACAGACCATAAATAATAAAACAGAAGAAGCTCTTTAAGCAAGATATAAAGCCAGGAGGCCAAAAGAGAAATATGTAACCAATATAAAAATATTAATTTCTGCATGATGAAAGATATTCTAAAGTTGTCAGGAAATATATACATAATGCATGCCACACATGGACACCCTTAATATTAATATACTTCCTACAAATCAAGAAGGAAAAGGATAATTGACTAGAAAAATAAGGGATAAAATATACACAGACAATTGACAGGAAATGAACTGTGAATTACCAGTAAGCATGTAAGCACGAAAAGAATAACCAATGTGCACATCACTGTCTATGTCACCTTGATGGCATGCACTGCTGGTAAAGGTATGGAGGGACCAGCACTCTCATGCTATTGTTGGTTCATTTGGATTCTGGTTAAGCTTCATTAGCTTCTCTTTCTTTTGTGTTAGAGTTCAAACCTAACTGAGGCCTTGTGCACCATGGAAATGCTCTACCTCTGAGCCGTATATCCAGTCTGGCTCATTTCTTTTGGAAGATAATTTGGTAGTCGATGAAGTTTTTAGGCATATTTATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTAAACACATATATGTTCACTAGCCCAGACATTTAATTCACATATGTTGACTTAAGAGACATCTTCAAATATGAATAGGAGGGCATTTAACAAAACATTCACTGCAGCATAAGTCAGAAATTAAGAGCCTCTTAGGTATTGATGAATCAGAAAATAATTGCATTATACAATATCCATCTATCTATAAGCTTAAAAGATTAGGAAGACTTATTCGATCAAATATGCTGAGACCTCCAAGATGACAAAAGTCTAACACTGTAGTATTAACAGAAGAATAGTGCAATACATTTCCACATACAATGAAAGGGAAGGAGGGAAGAGTGGAGAAGAGAAATTAGGCATTGCCACGTGCTTTAATAGTTTTTGTTTGTTTAGTGATTTGTTTTAATTTTTCTTAGCAAAATTTTATTTGGTTTATATTTAAAAATGTAATGTAAAAAAGTATAAGCCTGGAATATTTGATGATATGGGAGCAAGGAGAAACCAAGCCAAAGTGTGACATCCATTTAAAACAAATCAAAAACCCCAATTAGAAAGATTGCAGCATTCTGTAATTAAATGTGTTCACCATATCTCAGTTGCCAAAGATTAGGAAGGACTCCAGCTGAAGGGGTGTATGCTGAGTTCAGCTGCTTCAGCAGGAACGCTCAACATCCAGCTTGTTAGAAAGCGTCAATGGCTATCCTCTTGATTTGGCACACAACAAACAGGACAGGAGAAGGTATCTATGTACTCATCACAAATAGATCCAGGAATGTGTACTGGGGGAGAGAGAGTCCTCCTTGCCACCATTGTTCCACCCAAACAACATTCATTCATGTCAGCTGCCACTCAACATCCAAGCCATAGTGAAGCAAAAGGTCCCACAGAAGCAGATCCTGCGGTCACTGAAACAACCACACAGGCTGCTCTGCCAGCTGGAATTTTGGGGAGCATGAACAAATCCAGGTTGAGTCATGATGACTGTTGGTGCCTGAGCCATCTTCAATGCAAGGTCTCAAAGTCTGGGTATGGGGCTTACAACTGTCAATAACTCCAAACTCAGAGGTTCTGAGGCCATCTTCTGACTACATATCTTCACTTCCCATGCATTCTCCTCAAATATCTGGTAGTGGCAAAGAACCACTGGCACTGAGGAAGCTTCAGAATCCAGACCATGCTTTAATAGTTTAAGTGTGTGCCAGGATGCTCTATAACCCTGCTTTCTTCTGAGAAAGGAAGTGAGATGGACTAAGGCAGGGAAGTATTGGTCTAGGAAAGAATGGTGATGAACACTTCTTTCACCTAGAATGAAATATCCACACATATGTAATACATTAGTTCATAATGGGCGATGTGGCTCCCTATGGCACCAAGAAAGCAAGTGAAAACCTGAAGCCAGTTTACTGTACCATAATGACATGAGAGTGACTCCAGGACAACGTAGCTTGGGGAGGTGGTGGAAGCAGGGTCACGGTGAAATGGTCAGAATGGCGAATGGGACATTGAGACTTACAAAATAAGGTATTCCTCCAAAAGGAAATTGTGAGGAACAAGAGACCTGGGTTAATACTCCAGAGAGAAACACTGAGTTGACCACTGACCTTCTGTACCGGGAGGCATGAACATAATCTTACGAAAGAGCCTATAGTACAGGAGAGTAACTATGAAGAGAGGAAGTCTAGATCCCCGAGTACAGAGCGTCCTTCCATAGAGCAGATGGAGAATGGACAAGGCATGACTTCTGGGAAATACATGCTATTAAGGACCAATCTTAGCCCGAGCTCCGTTTTCTCTGGTAAGTAGGGCTGTCTACCAAGAGTAGGGTAGGAGAGGATATGGCAGTCAGCTTGAAGAAGTACAGAAAGACTTGAACTGTAGTGGAGAAAGCCGTTCCTGACTGGAAGATCACAAGACTGAAGGAGCGGCAACAGGCCAGGCTGGAAAACATAAATTTCTGTTCATAAAATACTTTACCTTCCTGTGGATGTAGACAGCACCAGAATTTAAAATGATCTAAGATTTAGATTGTGTCTGGCAAGTACAGACAAGGGGGAGGTAGCACAACATGGCCGGTGTGCCATGGATCCTAGGTGCTAGTTTAGTAAGAAAGTAGGAAGAGACCAGCGGGGAGTGGACTCTCGGCCAGGCCGAGTAGAAATTAAGATTGATAACTAATGATTGTATTAGACCTAAACCTGTCACAGTATTTCTTCCACAGTGTTAGAGAAATTAGAGAAGCCACAGAAACCTTTTTCCAAACAGCATTAATGCTTCTGTACGGAAATTCCTTCCCCTTGCCTCTTCCTAACTGATAGTCACTCTAGAGACAGCCAGTGTCCTTTTCAGAAGCATGAGGATGTACCTCGGGAAATGGCCTGTTAAGGTTGAAGAGCAGGAATTAATACCTAACGACTTTAAGAAATATCATGTCTGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCTTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGATCTGATGTCCTCTTCTGGGGGGTCTGAAGACAGTGACAGTGTACTCACATATAATAAATAAATAAATAGATAAATAAATCATTTTTTAAAAAAAAGAAATATCATGTCTGGTTGGCAAGATGACTTAGAGGGTAAAGGTCCTCATCTCACAAGCCTGGCAACCTGAGTTCAATCCCCAGATCACATAAAGGTGAGAGGGAAGATGTACAGCTCCAAAAGATTGTCCCCTGGCCTCCACACATGCACCACGGCATGTGTGCCCACACACAACACATGCACAACAGTAAATGAATAGAAATAAAAATTAGCATATGCAATGTCATACCAAAGTACTGCATTGTTAAGAAAGGAATTTATTTTTATTTTATCTTGTATTTAACTTAGTTAAATATAATCATTAATCATCAATCTTTAAGTTTCAAACACCCACCCGCAAACACCTTGTGTCCAACTACTTCAAGTTTAGTTTTTCTAGAAAACCTTTGGCAATGATAAGTTTAGAAGGAGATCTGTTGAACTCTTTCAACTAAAGAAATTACCCAAATATAAAATACAATCAGTGCGTGAGGTTTTCTATACAGAATAATGTTTTTCCTTTCGTTTTTTATTCTTGTTCTTTGTGCTTCCTTGACTATCTTTTGGTGAATCTTAAAATTATGATCTTCTTTTTTAAGGTCTTTAAATCAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCCTATTCATTTAAG
Seq C2 exon
GTGAGGATGCAAGGAGATGCAGCTCTTCTAAATAAGAGAATAAACAGTCAGCCGGGGCTCACAGCACTTCCTGAGAACCCAAACCTTGCACTTCCACATTTCCAAGATACACCTTGTGAGCTGCAGCCAAGGATTGACCCGTCTCTTGGTCAGCCCATGAAGGACGGCCTCGTTATGGGTGGCCAAGGCGATGCCTCCGTAGACGCCATTTACAAAGCAGTTGTGGATGCAGCCAGCAAAGGAATGCAGGTTGTCATCACCACTGCTGTGAACAGCACCACTCAAATCAGCCCTATCCCAGCCCTGAGCGCCATGAGTGCCTTCACTGCCTCCATTGGTGACCCACTAAATCTGTCCAGTGCTGTGAGCGCCGTCATCCATGGGCGGAACATGGGAGGAGCGGATCACGACAGCAGGCTGAGGAATGCGAGAGGGGCGCGGCTACCCAAGAACATAGACCATGGGAAAAACTCTGGTGAAGGAGACGGGTTTGAGTGTTACAAGTCAGCGAGCTGCCACACATCCAGAAAACAATGGGATGGAGAGCAAAGTCCCAGAGGGGAGCGTAACAGGTGGAAATATGAGGAGTTTTTAGATCATCCAGGCCATATCCACAATAGTCCTTGTCATGAAAGGCCCAACAATGTCTCCACACTGCCATTTCTAGCTGGGGAACAGCACCCAATACTGTTACCACCAAGAAACTGTCAAGGTGATAAAATTCTGGAGGAAAATTTCAGGTATAATAACTACAAAAGAACTATGATGAGTTTTAAAGAGAGACTAGAGAGTACTGTGGAGAGATGTACACACATTAATGGAAACAGACCTCGTCAGAGTCGGGGCTTTGGAGAGCTGCTAGGCACTGCAAAACAAGACCTAGTCCTAGAGGGGCAGTCTCCAGGCTCTTCGAATAGTTTGGAAAGTTCTCTGGTCAAAGACTACATCCATTACAATGGAGACTTTAATGCCAAAAGCATTAATGGGTGTGTGCCTAGTCCCTCCGATGCTAAAAGCATTAGTAGTGAAGACGACCTAAGGAATCCAGACTCCCCCTCTTCTCATGAGTTGATACACTATAGACCAAGGACGTTCAACGTTGGCGACTTGGTCTGGGGCCAAATCAAAGGACTGACTTCCTGGCCTGGAAAATTCATAAGAGAAGACGACGTTCACAATTCATGCCAACAAAGCCCCGAGGAAGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027596:ENSRNOT00000034632:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.598 A=NA C2=0.514
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0085512=PWWP=PU(46.3=9.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]