BtaINT0090405 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004564 | MBNL1
Description
muscleblind-like splicing regulator 1 [Source:HGNC Symbol;Acc:HGNC:6923]
Coordinates
chr1:116238831-116241681:-
Coord C1 exon
chr1:116241607-116241681
Coord A exon
chr1:116239229-116241606
Coord C2 exon
chr1:116238831-116239228
Length
2378 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
TTTCTTTTTCTTGCCTTTAGGAG
3' ss Score
11.53
Exon sequences
Seq C1 exon
ATACCCATAATATCTGCCGAACATCTGACTAGCCACAAGTATGTTACCCAGATGTAGAATTTTCATCACTAAACA
Seq A exon
GTAAGTTCATTATATAATATTGAGTGTATATTCATGGTGTTTTTTTTTTTAAGATAACAATTATGTAATGCACTTAAAAAATTTTGCAGAATTCAAAAAAATGTACTTATATAGAACTCACGATTTTATCTTAGACGGGTTATGAGGAATTTTAATGTATGAATTTATAAGAAATATGCTAATGTCATTTAAATATGCATAATACTGAGGATATATACATTTTAAAAAATTTTGTACTAGAAATAAGCACAATCGTGAAGGGAAAATACAGCTTAAAACTAAATAGAAGGTATAGATCAGGGACTGGCAAGCTTTTTCTTTAAAGATGAGATAGTAAATACTTTTGGTTGTGTGGGCCATAGGGCTACTCTGCCGATATAGCATAAAAGCAACCAGAGACAGTGTGTAAATGAAAGGGTGTGCTGTGTCCCAGTTAAACTTTATTGGTGGTGCTAGTGGCAAAGAACCCACCTGCCAATGAGGAGACATAAGAGACACAGGTTAGATCTCTGGGCTGGGAAGATCCCCTGGAGGAGGGTATGGTAACGCACTCCAGTATTCTTGCCTGGAAAATCCCGTGGACCAAGGAACGTGGTGGGTTATGGATCATAAGGTCACAAAAAGTTGGACACACACAAAAACAGGCAGTAGTCAGGATTTAGCTTACAGGCAATAGTTTGCTGATCCCTGGTATAGGTCAGCATTTATTTTATTCAAAAATTGTCTTGCTAAATCCTAAATGAGAACATGTATCCAGTTCACCCCATGCTTCACCACATCAGGGTCATTAGGATATAAAGAGCCTAATTTAAATATATTCATGCATTCATATAGGAGAAGGCAATGGCACCCCATTCCAGTACTCTTGCCTGGATAATCCCATGGGCAGGGGAGCTTGATAGGCTGCAGTCCATGGGGTCGACTGAGCGACTTCACTTTCACTTTTCACTTTTATGCATTGGAGAAGGAAATGGCAAGCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACGGGGGAGCCTGGTGGGCTGCCGTCTATGGGGTCGCACAGAGTCAGACACGACTGAAGCGACTTAGCAGTAGCAGCAGCAGCATGCATTCATATATGCACACACATACACACACACGCACACATCTACCTGGATATTTGCTCAAATAGTTTGAAAGTCTTGTAGTTTCTTTTCAGACACACTGACTTGCAAAGATGACCATGTTTCATCCTTTTAGATCATGTTTTATTCTTAAGTATTCATTCAAGTTATCTACCTGCTCAGAATTATATTAGGTATTTCTTTTTATATTTAAGAAGAGCTACAATGCTTAAAACTGAATCTGGTAAATAAGATGAGTGATCATTCTTTCTTTGTTGCTTCTTTTCATTCATTTATCTGTGCATTAACACATTTATAAATGATTTTTTGTGTTATCTACTGTGTGTTAGTTACCAGGTCGATGAAATAAAGATTGACAGTCAGTGAGATGATGATGGAAATTTTAGCACTCTTTATTAAAATAAGAGAGCTTTGAACAAATTCCTCTAGGAACAAAGATGAAGGAGCAGATCTTCCTAACAGAGTCAGAAATTAAGTGAATTTGAACAGTAAAGGTTGATGCAGAGAGAAAGGAGATATCAGAGCCTTATAGAAGAAGGGACAGGATGTTGAATCAGGAGATGGTGTTAGGGAACCAGTTCAGAGGCCCTTGCAATAATAATCTATAGGAAGAGCTTGTCAGAGGATGAACTCATAGAGAAGAAAACAGACACAACTTGAAATAAAGGAATGATAAACTCAATCCGAGATGCACCACCAAAGATGTGCTGCAATCATGAGTTAAATTACTGAAACTGATTTCTATTTCATAAGCTCTCTCAGTGCAGTTCTAATAATAAGGTTTATTATTCTGTATAATGTAATAGTACATCACTTTGTAGTATGTAGAGTTCTTCTTTAGACATGTTAAAACCACATTTCAAGCTTTTATGGTCAGTTGGGTATGCATATATGTAAACAAGTTCTGTTTCTTAGCAATAATCCAGGTTCATAAAAAATACAAAATGGCTGTGGAGTTCATCAGTTAGCAAAACAGTAGATTTGTCAGTATTGAAACTCAAGCTCTTTAAGGTTCTGTTTATTTAACAAATACTTACACATTTTCATGAGAAGCTGCGATATTTAGAATGGTTTTTGAGTGGAGCAGAATGGTGATTTTTTAAATTCTCAAGTTGTATGAAAGCATAGTTGAATATGTAAAGATTCTATGGGAACAAATTTCATGTAACAGCTGGAATTATTAAGTCACAAGTACATTGTAATATCAGTTCAACCTGAATTTGTCAAGAGCATAAGGAATGATTTTTCTTTTTCTTGCCTTTAG
Seq C2 exon
GAGAAAAAATCCAAACTGCAAATTATCCAAAGCAGTCACTTAGAGTATCTTCGTTTTTTTTGTTTTTTGGTTTTTTTCCGAACACATACTGTGCTAATCAAGCATTCACATAGAACAAATTGTGTTTAATAGGACTGTTTCATGGATTTTAATTTTGTGGGCCAAACCATTACTTCTGAAACCTATTAAACTTTAGAAAGAAGTAAAGTGAGTTGTAAATTCTGTCCCACAATGATAGTGCTAAAAGAGCTCTGCTGTATCATGCCCCTTGATTCTGCAAATGTATTTTATACTTTAAGCTGTGTATTGGCTGATATCTGTTCAGAGACTACAATTTTATGAAGCTGTGAGTGTCATTTTATTCTCAAAGAGACAATAAACACATTTTGGTCCTTTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004564:ENSBTAT00000005998:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (disopred):
C1=0.500 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development