GgaINT0031675 @ galGal3
Intron Retention
Gene
ENSGALG00000010361 | MBNL1_CHICK
Description
NA
Coordinates
chr9:24950173-24953746:-
Coord C1 exon
chr9:24953672-24953746
Coord A exon
chr9:24952701-24953671
Coord C2 exon
chr9:24950173-24952700
Length
971 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
CGCTCTTCTTTCCTTTCCAGATC
3' ss Score
13.38
Exon sequences
Seq C1 exon
ATACCCATAATATCTGCCGAACATCTGACTAGCCACAAGTATGTTACACAGATGTAGACATTTTGTCATCAAACA
Seq A exon
GTAAGTTTTTGATGTGTTGTTGCTTGCAGTTTTTCTTACGTGTGCTGAATTTGTCTTTTGCAGGGGGACAATGTTTTTGTTTCCTTTCAAAGAAAACTACTGAGATATGAGGGAGGAGGCTGAGCTCCCACTGCTGCCATCCTGCAAAGGGAGAGCCCATAGTTAGCAGTGCCCCGCCAGCCCGTGTGCTGGCCTGGCATTGGGGCGGGTGTGCGTGGGAGAGCACGCTGTGCGTGTGGATATACTTTTGCATAGCAAAATCAGAGTCTCTGTGATTAGAGGTTTGCTTCCTGTGTATAAAGGATGATGACACCAGCTCTAGGTGAAGGGGTCATGCCAAGCTCTCTCTAGAAAGAAGTAATTTTAAGTCTCCACATTAGGAAAGGCAGGGTGATTCACCAAGAGCGGGGTTAGTCACCGCGCTGCAGCTCACTTGCTGTCGGGCAGGGCTTGTCAGGCAGCCGAGCGCTGCACAGCGTTGCTCTGGCCAGGCAGTGCAGCGGGGACGCGGTGCTGGGTGCCCGGCTGCTGCTCATGTTGTGTACCGGAGCTGTGCCCAAGGCAGCGTGTGGCAGCACGCCTTTCCTCCTGCACAGCCTGAGGTCAGCGTGCCTGAGCCGCAGAGGTTTTCTCCCTACTGTGTGTTCCTCTGGGCAAACTGTAGTTTCCAAACTGTCGCTAATTTGCATGCTGTGAATTCAGACCATCAGCAGTGCGTCACCTCTGGGTATCCCTGCTGTTTGCGTTATCCTTCCCCCTCCCATGCTCCGTTTCTGCAGCGTTTGCCACTGGTCCTAACGGGGCAGTGCTTTGGGTGACGGTTATCCGCTGTGGCGCTGTGCTTGCGGCCATGATTGCAGCAGGGGTGCCTTGCAGCGGCGGAGCGCCCGGCCGGCCCCGCTGTGCTGTGTGCTCGCTGGCTGCTCCCTCGTCTGGCCGCGGGGATAACAACGCTCTTCTTTCCTTTCCAG
Seq C2 exon
ATCATCACTGAGGAGAAAAGGACAGTGTGTTTGGGTTGAGGAAGGACAAGTTCATTAGCCATAATGTATATATCGTCAAGCCACACTCGGAACCCCCTCAGCAGTAAGACATCCACACATTGCATGTTAAGGAGACGAACGAGAACTTGGGAATCCACTGCACACTGTTGCCTATATACTTTGTACATTTAATTGATATTTGTGCTGAGGTGATCTTCTTGTCTAAGAACTACAACATTGTCTATCTTTTCTAGCGCAGGAGCGCGCGTACGCGCTCGGATTCGCGTGTGCGGCCAATTTCCTACATAACCGTGTATGTCACCTTGAAAAGACAGACTATGGTGTAACCATGAATCTATTATGTATTGGTACGTCTGTAGACCAAGATATAATTTTTTAAAGTAAGTTTATTTCTTTCAAGGTTTACAAATAACAAAGGTGCACCTTGTATTTAAAATTGCCATTATAGATGAGAGTGTGCATGCACAGTAATTTTTGTTTAAGAGTAATATTTTTAATGTAATGGATTGTAAGAAGCGGTAAGAGAGGTATCTGACAGAGATGAATGTGCCAAGCAAAACCACAACCGTGTCTATTTTAAAGCACGTCGATGGCTTTAAGTACCACGTTGTTACGGATTCTCATGAAGTGCCATAGACTGTACAGCAGACCAGAGTGTTATTTTGCAGTGTTATTTTCAGAACCACGTTTTCGCTTACCTTGCTCGTACCGATCAGTCAAAGGGCACCGTTCTGTTTCCAAACCAAAGCCGTCTCAGAAATGGCGCTCGCTGTGCTGCCGGAAAGGGAAAAGCCATTTCTGAGACGCGGCGACAAATGTCTGAGGAACTTCTTCTGCTTCTCTGCACAGCCTCTGTCAGAAGTCAAAGGACTCTAAACGCTCTGCAGATGGGCTGCGCCTTCCCTTCGCACAGTCACGCCTTAACTGGTGACTCTAAACTAAGGCGGCAGAAGCACTGGGTCAGATGCATGACGAACCAAAACATGGCAAGGCGGAGGTGTTGATTAGCGTAGGAATCGGGTGGGTGAATACTCGGGTGAGTTTTATATGTGATTTTTTTGTTCAGATTAACTGCTTATAGCCTTAGAAAGCCTTTACAAAATAATAATAATAAAAAAAGATAGATGTGCATTCAAGTTTTAAGAACGGATTCATCCAAAGGAATTCCTCCTTGTGGTTTGGATGTTGCAGCTCGTAAAGGGTATTTTTGCTCTGTTCAGCAAAGTGCTGACGTGGGGGCCAGGGCACTGGCAGCACAGCGGGTGGAAGAAGCGCGGGTTCGGTTCTAGAACCTTCCATACTTCCGAGTTTACGGCGAGTTTTTATGCTTGAGAGAGATGCTTTATAGTATAAGAATGACGTGTTGATTTTACTGATTGTACTGTACATCTATTAAAGCCTTAGATTATTACATTACGGGTTACAACCCATACCAATGTAATTTCAATCGTGTTAAGAAAGTATAGGTGACTTCACATGTTATCGTAGTTACTCGACATTATAGACTATTACTTCTTTTTTTCTCGTTAAAAGTGTAGTTTCTCCTCCTTACATTTATTAGGTCGTTTTCGTTTCCTATGACCAGCTGAGTGCCGTTTCAGTTCCTGGGGTCGTGTTCGTTAGAGCTGAACTAGGAGAGCAGTTTCCTTCATCACGTAACTCAGTTTGGACTTCGTGTAGCGTCATCCGAATATTCGTACTCTTGTTGACAAAGGGTTTCTATTTTGCCGATTTAATATGACAATGTAAGAATGTCAGTCATCGTTAGTTCTTGTCTAGTTCTCATTGAAAGAACAAAGATCTTTTATATGGATATCTTATAATTATATAATCATTGCTAAGTAAGGAGTTAAGTTGTTGCTATGGCAACGATCCTGGCAGACAATTGAGTAATATTTTGATGATTTATTTTGTTTGTAATTAGTTATTATGAGAAAATCTAGTTCCTAGATATTAGAATAAAATTTATTTTCTACTGTATCCATTTCAAATGTTAAAATATTGTTTAAATATTTTTTGAGATCCCTGGATATCAGGCCTTGTTATAAATAAGCTGCATAATCGATAGATCAAGGGACTTTTTGTTGATAATCCAAATACTCAAAGTTTACGTAACGAGAATTATAGCGTGTGTGTGCAAACTCGTGAGGGTTGATTATGCTGCAGTTGAGCATGTGGGAACGTACCGGGAGAAGGTTGACTTTTTGCACTTCTGTATATAGTCAAAAAAGAGAGAAACCTGTATAATAGTAAGATCTTATTTTGAATAAAAATGTCTATAATTACAAGGAGTTTTGTTAAGGCTAATAAAATGACAGGCTGAACAAAATTGCTTGCAAAAGTGGCACAGAGTTAGCACTCCATACCCCTTCAAAAAAGTTGCTTTGCTTTATGTGGACAGCTTGTAGTTTGCCAGGATTTTTTCAGCTGGAAAGATATGCCATCCTTCCGAGATCTCATGACTGACAAAAGCTCCACTGGTTCAAATCTGCCTGAAAACCATTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010361:ENSGALT00000016870:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGAACATCTGACTAGCCAC
R:
CGAATCCGAGCGCGTACG
Band lengths:
344-1315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]