BtaINT0091444 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047217 | MED16
Description
mediator complex subunit 16 [Source:HGNC Symbol;Acc:HGNC:17556]
Coordinates
chr7:45049225-45050756:-
Coord C1 exon
chr7:45050658-45050756
Coord A exon
chr7:45049403-45050657
Coord C2 exon
chr7:45049225-45049402
Length
1255 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
GCCTGTCTTCCCTCCTGTAGGAG
3' ss Score
11.35
Exon sequences
Seq C1 exon
GAGACTGGTTGGTCCTAGGAAGATGGCGGCGCCGGAGCTGGGGCGTTAGAGCGAATGCAGACGGCAGCCTCCTTCTCGGTGGGCGTACAGGCTGGTCCA
Seq A exon
GTGAGTGCGGGGCTGGGGGCTTGGGCAGTCGACTAGCCTCCGGATGGCGCCGACGCTGCTGGGATTGTGGGTCGGAGCAGGGCCTGTGGAGTCAGAGGGCGGTCCTGGAGAGCAGAGGGTGCTGGGTACGCTCCCTGAATGCGCTGGGCGTGGTCTGGGGGTCGTGGCGGAAATTTGGGGTGACCTGAGGCGCCCTGCGTTGGGCGGTGGAAAATCGGGGAGGGCCTAAGGTTGTACCTCCCCGGGGAGGGCCTGGGATGCATTTGAGGCGGATCTTAGGGACTGTCGGGTGGCTTGGGGCGGGTCCTGGGTGGCCAGGTGTGTGGAGGAGGCGCTTTGGGATTGTTTTGGAAACTTTGGGATAAAAACAGAAGTTCAGGCCGGGCCAGGGGAAGCCAGGGACAAATTGAGAGTGGGGTCTGGAAAGCACATTTTGTAGGGGCGGGGCCGGAGGGCTTTGGGGCAGAGCTTAAAAAGACTGCTGTTTGGGCTTGTGGACGGGGTCTCAGTGTTCCGGGGCGAGGCTTTAAGAAGGAGCGGGTAATGTGATTGGGAAGGTGAAAGGAAATAACCTTAGTCGCTGCTGGGCGCAAAGAGCCTGCTCAGGAAGCGTTCACTGACCCTTTCTGTACCCCTGGAAGCCAGGCCCCAAGGTGCTGCCTAACCCCCACCCTGCCTCCCTGCCTCTGTCTAAGGCAGCCTCACTGGTTCTCCTGTGTCCACGGGCTCCTTCTTAAGAATAGACCTGGGTGCTCCTTCTCATCGCAGCTTTCACTGTCCTCGTCACGGTGCACCTGGACCAGTGCCATCACCTCTACCCCATTCCCCAGCCGTGCCCTCCAGACAGCCAGAGGGGCCTGTGAAACAGAAACAGGCTTCTTGGGGCTCCCATCTCCCTCCAGGTGAAACCCCCAGGCCCTGCAAGACCTGCCTCATCCCCTCCCCATCCTTACCTTGCTCCACGCCCCCAACTCACTCTGTTCCTGCTCTGCAGGCCCAGACACTGCTTGAGCACCCCAGGCTCAGTCAAGCCTCTGGGCCTTTGAACTGGCTCTTCTCTCCGCTTGACATGCTCTTCCTTCCAACTGCATGGATTGATCCCTGGCCATGCTTGTGTAAAACGCAGCTCCCTGGCCACACGCAGGGCAGGGGTTGAGTCCACTTTGTCCCCCGTGGTAACCAGCATCCACCACCGCACTCGGGGCCTGCAGGCACCCTGTGAAGATGGATGACAAGCCTGTCTTCCCTCCTGTAG
Seq C2 exon
GAGCTGGTGACCGTCCTCCCTGTGTGACCTTGGCAATTGGGAGCCATGGACCTGGCTTACATCTGTGAGTGGGAGAAATGGCCCAAGAGCACCCACTGCCCGTCGGGTCCCCTGGCCTGCACCTGGTCCTGCCGCAACCTCATCGCCTTCACCACAGACCTGCGCAGTGATGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047217:ENSBTAT00000064681:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGTCCTAGGAAGATGGCG
R:
CTTGGTCATCACTGCGCAGG
Band lengths:
270-1525
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]