HsaINT0101538 @ hg38
Intron Retention
Gene
ENSG00000175221 | MED16
Description
mediator complex subunit 16 [Source:HGNC Symbol;Acc:HGNC:17556]
Coordinates
chr19:890963-893218:-
Coord C1 exon
chr19:893086-893218
Coord A exon
chr19:891150-893085
Coord C2 exon
chr19:890963-891149
Length
1936 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ACCACACCTCCCTCCCGCAGGAG
3' ss Score
10.92
Exon sequences
Seq C1 exon
CAGAAGTCTTTGGGAGGCGGCCCCACGCCTCAGGCGACTGGTTGTTACCGAGGAAGATGGCGGCGCCAGACCCGAGGCGCTAGGGAAGATCGCACCGCGGACGCCCGCTGAGCTTGGCGCACGGGCCGACCAG
Seq A exon
GTGAGTGCGGGGCTGCGGGGGCCCGGCGAGGGCGGACGGACCCCTGACCGTGTCCACGGACCCGAGGGAACGCGGCGCAGCCGTGGCGGGGCCTGCGGGGTCGGGGGCGTGGCCGGGAGCAAAGGCTGCTGGGTAGGCGGCCTGGGGCGCGGGGCGCGGGGCGCGGGGCGCGGGGCGCGGGGCGCGGGGCGCGGGGCGCGGGGCTCGGGGCTCAGGGTTTGCGGCGGAAACCTGGGGGAGGCCTGAGGCCCGCGGGGCTGGGTTCGGGGCGGGGCCTAAGGAGAGTTTGGGGCGAGGCTGAAGGCGCTTGGTGGGACTTCGGGGGCGGGGCCTGGAGTGGGTTTGGGGTCGCCGGGGTGGAGCCTGGGGACTGGGGGGCTGTAGAGGCAGGGCCTGGAGACTGCGGGGTTATCGGTGCGGGGCCTGGAGAGGGAATAGGGTCCCTAGGGTGGAGACTGGGGACTGCGGAGTTATAGGGGTCTGGAGAGGGTAGGGGGTCCCTGGGATGGACCCTGGAGATTGGGGGTTATAGGGGCGGGGCCTGAAGAGGCTATGGGGTCCCTGGGATGAAGCCTCGTATTTGGGGGCAATAGGGGAAGGGCCTGGAGAGTACGTGGGGTCCCCGGGGTGGAGTCTGGGGACTGGGGAGTTTTAGGGGTTGGGCCTGGAGAGCTAAGGGCGTTGGAGGCTGGACCTGGAGAGTACATGGGACCCCTACGGTGAAGCCTGAGAATTTAGGGTGAGGCCGTGGGCTCAAGGGGTGAAATGAAGTGTGGGAAGCAAAGGGGGTCAGGGGTGGGGCTGAAAGACTTTTAGAGGCTTGTGGCGGAGCCTTGGGGGTCTGGGGCAGGCCCTGAAGAAGTAGGGAGCCGGGGTTAGGGTTTGAGGAGAACCTGGTTGCGGGTGATTCCAGGCTCCCTGGGCTTTTGCCTTTGCGAAGCGAAACAGCCCGTCTGGATGCCAGGCGCTTAGAAAGCCTCGAGGAGGTGCCCCCTCTGTTCCCTGTGACACTCAGCCCCCGCCTCGGCCACAGGTGTTCCCCAACACACTCAGCCCCGCCTCGGCCACAGGTGTTCCCCGTCACACTCAGCCCCGCCTCGGCCACAGGTGTTCCCCGTCACACTCAGCCCCCGGCTCGGCCACAGGTGTTCCCCATCACACTCAGCCCCGCCTCGGCCACAGGTGTTCCCCGTCACACTCAGCCCCCGCCTCGGCCACAGGTGTTCCCCGTCACACTCAGCCCCGCCTCGGCCACAGGTGTTCCCCGTCACACTCAGCCCCGCCTCGGCCACAGGTGTTCCCCGTCACACTCAGCCCCCGCCTCGGCCACAGGTGTTCCCTGTCAGTCAGCCCCGCCTCGGCCACAGGTGTTCCCCGTCACACTCAGCCCCGCCTCGGCCACAGGTGTTCCCCGTCACACTCAGCCCCCGCCTCGGCCACAGGTGTTCCCTGTCACTCAGCCCCGCCTCGGCCACAGGTGTTCCCTGTCACTCAGCCCCGCCTCGGCTACAGGGAGCCGCCCCACCGCTTGCCTGTCTGCGGGCTCTTCCTTCGGGAGAGAGCTAGTGTCCACTTGCTGCCCCCATCATCACTCACCTGGGCCAGCGCAGACCCTCCGCTGCGTCTCCCGGCTGTGCCCTTGGCCCCCATGGTCTGTTCCCTAGACAGCCAGAGGGGTCCTGGTGAAACCCAAATAGGTCCCAGCCCTCCCGGGCTCCCACCTTACTGAGAGTAGAAGCCCACAGGCCCAGGACTGGCCCTGACCTCTCCATGTTCCCCCTCGGCCCCAGCCCCAGGCTCTGTCTGGCCTCCGGGCCTTTGCATCGGCTGTTCCCTCTACCACGGGCCTCCATTGTTTTCCCACTTCTGGCCTGGCACTCCACATGCCCTGGGTGCTCAGCCAACATAGACGTCCCACCACACCTCCCTCCCGCAG
Seq C2 exon
GAGCTGGTGACTGCCCTCATGTGTGATTTGCGGCGGCCAGCGGCAGGTGGGATGATGGACTTGGCCTACGTCTGTGAGTGGGAGAAATGGTCCAAGAGCACCCACTGCCCATCGGTGCCCCTGGCCTGCGCCTGGTCCTGCCGAAATCTCATCGCCTTCACCATGGACCTGCGCAGCGATGACCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175221:ENST00000395808:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGTCTTTGGGAGGCGG
R:
CTGGTCATCGCTGCGCAG
Band lengths:
319-2255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development