MmuINT0097402 @ mm9
Intron Retention
Gene
ENSMUSG00000013833 | Med16
Description
mediator complex subunit 16 [Source:MGI Symbol;Acc:MGI:2158394]
Coordinates
chr10:79370236-79371683:-
Coord C1 exon
chr10:79371563-79371683
Coord A exon
chr10:79370402-79371562
Coord C2 exon
chr10:79370236-79370401
Length
1161 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
3' ss Seq
ACTGCCTCCCTTTTCCCCAGGAG
3' ss Score
11.07
Exon sequences
Seq C1 exon
TTCTCCCACAAGTCTGTGCGAGGGGGCCGGCGCGGGCCTAGAGATGGCGGCGTCGGATCCCGGGCGTTGGGGCGAGTGTGGACCGCGGCCGCCGGGCCGACTGGGCGCCCGGGGCGGACAG
Seq A exon
GTTAGTACGGCGTGCGGGGTACGGGACTCGTGGCTGGTGCGTTTCAGGCTAAAACCGCGAGCGGAAGGCCGAGGGGCGGGGCTTGCGGGGTCAGAGGGCGGGCCTGGGAACAAAGCTTGCTGGGTAGAGGCCGTTGTGGGAGGGATGTGAATAGGGGGAGCCTAAGGCGACGGGGTTGAGGAGGGGGCGTGGTCCGAGGGGCTGAGCCTCCCTGGGAGGGGCGTGGCCTGAGTTCAGAAGTTGGATGGAGGGGCAGAGTCTGAAGAAATAAGACTGATAGAGAGGGATGTGGCCTAGGGAGCGGAGTCTAAGGTGGGCCGGGGTTGGGGGTGCTAAAGATCTGAGATCGATGCAGAGAGGTGACCTAGTAGTCACAAGCTGAGCAGAAACTGAGGCTGAATTTACCAGTTTGGTTTGGAGGCGGAGCCTAGGGTGATTAGACAATGTGGGTGGAGCTTAACGAGCTTGGGCGGGAGGTGGTGGAGGTGTGTGTGTTAAGACTCAGGATTTAGCCGGGTGTGGTGGTTCACGCCTTTAATCCCAGCATTTGGGAGGCAGAGGCTGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAACGTGAGTTCCAGGACAGCCAGAGCTATACAGAGAAACCCTGTCTCGAAAAACCAAAAAGAAAAAAAAAAAGACTCAGGCTTTTTGCCAGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCAGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGAGAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAAAAAAAAACAAAAAAAGGCTCAGAATTTGAGCCTTGGATGTTAACTTGTTGAGAGTATTGTGTGGCATGGGCTGCTGCGGGGTCTAAGCTACTAGGTCCCAGGCAAGGCTTGGAGACTGAACTAGAGTGTAGACTGAGGCCCAGACTGAAGTGGTAGGGGTGGGCCCGGTTGTGTGTGTGGAGGGTGCTTAGCGTTTGTAGGCTGAGCTCAGGCTGATCTGGGTTGCCTAGGGAGGAGTGACCCCAGGCGGGGCATCATGGATTTTATAGCAGGGCTCTCGCTGGAGAACATTCTAGACACCCTTTAGCTGGGAGCTGCTATAGAGCACTGCCTCCCTTTTCCCCAG
Seq C2 exon
GAGCCAGGGACCGTGCTGGGTGCGGTGGGTATGATGGACCTGGCCTATGTGTGCGAATGGGAGAAGTGGGCCAAGAGCACGTACTGCCCGTCGCTGCCCCTGGCTTGTGCCTGGTCCTGCAGGAACCTCATTGCCTTCACCACAGACCTACGCAATGATGACCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000013833-Med16:NM_198107:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.846 A=NA C2=0.005
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAAGTCTGTGCGAGGGG
R:
CCTGGTCATCATTGCGTAGGT
Band lengths:
281-1442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: