BtaINT0091669 @ bosTau6
Intron Retention
Gene
ENSBTAG00000034140 | MEGF11
Description
multiple EGF-like-domains 11 [Source:HGNC Symbol;Acc:HGNC:29635]
Coordinates
chr10:12740584-12746011:-
Coord C1 exon
chr10:12745877-12746011
Coord A exon
chr10:12740713-12745876
Coord C2 exon
chr10:12740584-12740712
Length
5164 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTC
5' ss Score
7.46
3' ss Seq
AGGCTATCCTGTGCCCACAGTGT
3' ss Score
6.04
Exon sequences
Seq C1 exon
TCTGTGCCCCCGGGTTCTATGGCCATGGCTGCACCCAGCCGTGTCCCCTCTGCGTGCACAGCAGCGGGCCCTGCCACCACGTCAGTGGCATCTGTGAGTGCCTCCCTGGATTCTCTGGAGCCCTTTGCAATCAAG
Seq A exon
GTACTCTCTCCAGGGGTGGGGAGAGGGGTGTTCTGGGAGTGGGGGGCAGGGAGACGAGGAGTCCTGGGAGGGGAGTAGAAGGCAAGAAAGGTTCAGGATTCTCATCAGGCTCTGTGGAGGCAGTTCCTCGGCTCTTCAAGGTTTGTTGTTGTTCAGTTGCTAAGTCATGTCCGACTCTTTGTGACCCTATGGACTGCAGCACACCAGGCTTCCCTGTCCTTCACTGTCTCCCGGAGTTTGCTCAAATTCATGTCTGTTGGGTTGGTGATGCCATCCAACCATCTCATTCTCTGCCATCCTCTTCTCCTTTTGCCTGCAATCTTTCCCAGCATCAGGATATTTTTCAGTGAGTCAGCTTTGGGGGGCTTAGAGCTACCTTAATAAGAATTGGATATCACGGGCCATGAGAAAAAGCCATTATGCAATTGAAGGAACAGGCTCAGAGAAGGTAAAAGACTTCTCCATGGTCTCACGGCTAGCAAGTAGCAGAAGTGAAGTGAAGTCACTCAGTCGTGTCCGACTCTTTGTGACCCTGTGGACTATAGCCTACCAGGCTCTTCCGTCCATGGGATTTTCCAAGCAAGAGTACTGGAGTGGGTTGCCATTTCCTTCTCCAGGGGATCTTCCCAACCCAGGGATCAAACCCAGGTCTCCCCCACTGTAGGCAGACGCTTTACCGTCTGAGCCACTAGGGAAGTCCAGCAAGTAGCAGAGGTGAGAATCAAATTCTGACTCCAAAGCCCAGTCTAAACAGATGAAAAATGAAACAAGCATAGCTGAGGTCCACATACGAAGTGGCCGCAAATGGCTAGTGCTGCATGTCAAGTGGGAAAGGCAGAGAAGGCTGTGGGAGCTCAGAGGAGATGGTTCTGGCTTCACTGGAGATGGCAACTTCCCAGCCCTTCTCTCCTCGCACTCAGGCCAACATCACTAATCCCCCACTACACGCTTTCATGTCTCAGCTGCAGAATTCACAGCACCCACTCCAGCCAACCTCTTCCACTCATTGGGAGTTGAAAGGGGAGTTAAGCTTATTGCACTGATCTGCGGTTAAAAAAAGCCCTAATTTGTGTCATATGCAAATTTCCATGATGTGGATATTCCCACCATGGCTGATTTGAAGGTACTAGTGGTTTAACCAGTTGTGAAATTCCTGAGTATTTAACAACCAAGCTGAAGGCAGAAGCTGGCTGCAGTGCCCATCATGACTTATTGCTGTCCCTGGCTTAGTTAGGCCAAGGCAGGGTGGATATGGGGGACAGCTCCATCCCGTGCTGGATTTCAACTGGGACTTAGCCTAAAAGACAGATGGAAGAAAAGCATTGTGGGTGGAGGAACCAACCTGGGCAAAGCACAGAGGGGTGGATCTGCGACTGTCCAGCTGTAGGAAGTGACAGGAGGATTCAGGGGCTGTGGGTGGCAAAGGGGACTGGGAAGGTCGTCTGGGGACTCCTGAAACGTTCTGAAGACAAGGATGCAGAATTTGTACTTTAACCTGTAAGGAGCGAAGAGATCTTTGTCTAAGGTAACCTTAGAACTAAAAGCAACTTCAAGGTCATCTATGAAAGAGTTTCATCTGGCTTCTGCTTAAATACTTCCTTTGAGAGCTCACTGCTTCCCAGGGGACCGAATCGTTTTGATGAATAATGACCACTGAGCTCGGCTATTTTTGTAAGCGTGTGGGCCGTTAATATGTATGAGTGGGAAGTTTACTCCATGATGCTTTGAGGTCATGAGAAGTTTGGAACCCCCCAGGAAATGTATGTGACAGTTTCATTTGCTTGCATCCCTCCTAGGACAGTTTAATCATAACCTGACACGTCGAGGTTTACTTATTAAACATCAGAGACCGAGCCGTCAATACAGATAGACTGGGTCTAAATTAGGACCTAAGCAGCTCGAGGAGTAACTCTCAGATCCTGCAATGTCTGATTTATCTCCCGCTGGCCTAATGAGTATTTTCCACATATAGATCTAATAGAGTTTGCTATTAATGGCAACTGCCCTGGTTAAGTCTCAAACCTTGTAAAAAATTGAACTGACAGTTTCTAATGACCGGCTTTTCAGCGAGTTACAAATTACAGACATTGCTTATGCAGAATCATTAAACATAGATTAAATATAACCAGATGTTTTCTTTTCACCAGCCCCCCCACCTGCTCCCCCCACCCCCTTCTCTCCACCTTTCCTCTCTTTGCCTCACTCTTGATTCAGCTAAGAAGTCAACCAATTAATGCATTAGACTGATCACATTAGCAGCTCTGTGGGTGAATTTGTCAGCCTTGTGTATGTGAGAAAGACTTCAAAGATAAGACTGTCTTGTTAGCGAGGATGAGTTAGTTTTAAGAACGGGGTCAGTGGAGCATCTCTGGCACCCCATTCCCCACAGAGGGCCAGGACTAGGGGATGGATTCCCCAAATCAGGTACCTCCGAGAGGCTGACCTGTTTTTCAGGAAACAGAAGCGAGAGGCTGAGCTGCAAACAGGTGATGTGCATGCCATCCTCCTGGCAGTGGACCTGCCCTGGAAGGAGCTAACGGTTTTGCTAGGGAAGAGCACAGGGGCCCAGAGCAACCAGGGTTCCCACAACCATTAACTACAGCCCAAGGCCCGTGGGCGAGGGTTATCAGCCCCATTTCAAAGATGAGGAAACAGACTTGCTCAAAGGTCCTGAGACAGTGAGTGGCAGAACTTCCTAGCTGTGGGCAAGTTACTTAGCCTCTCGATGCCTCAGTTTCCTCATCTGTAGACTTAATAGGGAGTAATAATGAACATGTATAATAATGAGAGTATTACAAGGTTAATTAATATTTGTGAAGCACTCTGAACAGTGGTACATGCAAGAGACATAGAAGTGCTTATTGAATACATAAATAAAACCAGCAGCCAAAGCTTTGGCTGGCGAGCCTGGTACACCATGCTGCCTTTATTGTTTGTCCCAATTGCTAACAATGTCCTGGAGAGACACAGAGTGGACACAGATCCTAGGCAGCTGCTGCCAACATGAGGCAGTGTGGCATAGGGAGTGGTGAGGGCTGCGGGCCCAGGGAAGTCGCTTTTCTTCAAAAATAACCACCTTCCCGTGATTCTCTGTGTGGCCCAGCCAAATGAGGGCCTTGGGGATGCAAGGAGTTCCTCCCCCATAACAGGGATGCAAGGAGGCCATCCTGGAGGGTATAGGGCTGGCTGGAGCCTGGCTTCGAGGGGAGCATGTCGAATTGAGAGGAGCTCTAAGGGACAGGGGCCACTGATTCCAGTTTCAGAACCCACTGGAAGGTCACTGCTCCTGAGGCCGAGTTTGGCCACTTGGGGAATAGTTCTTGAGTGTTTGTTGTATGCCGTGCACTGTGCTGGGCACTCAGACACAACAAAGAAACAGAGAGGCAAGTTCCCTGCCCTCACAAAGCCTGCGGTCCAGAGGCGAAAATTCTGAACTCAGCCTTTTCGCAGAACTTGGTGGGAGGCAGCGGCGGGGAGCAGGGGCAGCAGTTTATTTCCGCATATTCAGCCTTGAGCACCTGTTGTTCTTCTAAGTGTGGTGGGGATACAGACATGGGTGGAACCCAGGCCTGGCCGGAAATGGTTCACAAGCCACAGTAACAGAAGGCCAGGGAAGAAACTGACTAGGGTCCTAGAAGCTCAAACAGGGATGTAGCCTCCCAGAACAGAGAAGGGGGTGAATATACCAGGATTCAGTTCAGCTATAATATAAAAAACCAAAATAACTGAATTGAAAATGACAAGCTGTATTTTCCTCATGCATTAAAATAAATAAAGAGATCCAGAAGCAGGTTACTAGGAAACGGTGGGGTAGCTTTCAAAGGTGTCAGGGACCCAAGCTGCTGTCTTGCTCTGCCAGCCTCGGCATACGGCTCACCTCTAGTGTAAGGTAGCTGCTTGAGCTCCAGCCATCTTACCTATAATCTTCCTCCATAATCCACATTATTCTTCAATAAGAGGGAGGAATGGGCAAATAAAGACATGCATTTCCACTTACCATTGGTTAGAAGGTAGTCACACCTACCCAGCTGCACAGGTGGCCAGAAGCCCAGTAAATTCTACTTCTAAGGAAGACGAGAACTGGTATTAAAGGACTTGTTGTCTACTATAGAGGGATCACCAGGTAGGTGGCACTTAAGATGAGTCTTGTAGGCAGGGTAGGATTTCCACAACTGGGCACAAGAGTCAGGGAAACTCTGGGAGGAACAGTTAAAGGCACAGACAAGGAAAGGCATGGGGTATTATTTGGAAGATGGTGTGTGGTCCAGTTTCTGGGTGAGGTATGTTTAAGGGTTGATCTCTAGGATCTAGGTTTTATTCTGGGGCAACAGGGAGCCACTGAAGATGTTTGAGCTGGGCACAGGAGTGCAATGAAGAAGGCTGTGGCTTTAGAGAGCTCAGGCTCTAGGAAGCAGGTGGAGGATGGATTTCAAAAGAAATGAGAGGTAGGTGCTTAGTGAACTCATACCTAGTATTTAAAGGAGCTTGCAGCTTGGTTGAGGAAATCAGCCCTTCTTCCAGCAACCAAAGAGTGATTCCTCCAGGAGGGGCTGGGCCCAAAATCCTGCAAGTGACTCAAAGTGTAAATACGACCGGAGCTCCATGTTGGAGAGCCCCTTATGGACTCAGGAAGGTTCTCCTGAGGAGGCTGAGTGGAAGCTCAAGGAACAGTTGTATGTGGAGGGACAGGGTACAGGGACAGACATTTGAGGCTGGCCCCCTCTCCAGCTAACTGCAGACAGACCGGCCACCCCACATGTCCCTCTTCTCCCGGCTATAAACGTCCTCTGCCCTGCGGCTGTGGGATCAGTGATGCTGACGAAAGTGTGACCATGGACAGCCGAGGGCTGCGGGCAGGAAGCAGTAGGGTGCAGAGGTGGAATTCCCAGACTCACCACTTCTGTCTGTGGGACCTCAGCCAAGTTATTCTACCCCTGTGGGCCTCAGCCTATTCCTGTCAGAGGCGGTCAGGAAGAAGGCAGCTGTGGGCACAAGAGGAGGAACTCACTGCTGTGGAAATGGGGGTGCTGAGGCAGGCAGTTCCCACCTGATCCATGACCCCATGGGGGCCACGACTGTGGCCTGGGAAAAGGGGTGTGGCTGTGGGTGGTGGTCTGAGGAGTGCAAGTGGGACAGCAGGTGCCAGGCTATCCTGTGCCCACAG
Seq C2 exon
TGTGTGCTGGAGGGCACTTTGGGCAGGACTGTGCCCAGCTCTGCTCCTGTGCCAACAACGGCACCTGCAGCCCCATCGATGGCTCCTGCCAATGCTTCCCTGGATGGATCGGCAAAGACTGCTCACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000034140:ENSBTAT00000036967:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(31.8=30.4),PF126612=hEGF=WD(100=28.3)
A:
NA
C2:
PF0005319=Laminin_EGF=PU(69.0=65.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development