GgaINT0027385 @ galGal4
Intron Retention
Gene
ENSGALG00000007631 | MEGF11
Description
multiple EGF-like-domains 11 [Source:HGNC Symbol;Acc:HGNC:29635]
Coordinates
chr10:17694135-17697584:-
Coord C1 exon
chr10:17697450-17697584
Coord A exon
chr10:17694264-17697449
Coord C2 exon
chr10:17694135-17694263
Length
3186 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
AAACTGTTCTGTATTTCCAGTGT
3' ss Score
6.54
Exon sequences
Seq C1 exon
TTTGCCCCCCTGGCTTCTATGGACACCACTGCAGCCAGCCATGCCCTCAGTGCGTGCACAGCAGCGGTCCCTGTCACCACGTGTCCGGGCACTGCGACTGCTTGCCAGGATTCTTCGGCGCGCTCTGCAACCAAG
Seq A exon
GTATGGAGCCTGGGACCCCACAGCCGCCTTTCCCAAGTCTCTGTGGCTGTGACTCTGCAGCAAGACTGATCACAATGTGTCTGCCTTTTTTTCCCTTGTTTCAGCAGTTCAGATCACAAGAAATTCTTTATTTCAGAGGAAAAATGCAAATAGGTACTTAGTCACCCTTTTGTAAATCTGATGTGATCCTGCTTTCATAAATAAAACAGGTCTGCCGCTCCGCGTTGAGATGAATATGGAATGAGACACCTGCTGTAAATACATCAGCCATCCAATGGTTTCATTTTCCTTTCTGCTAAGCCCGTCACAGCCTAAATGTTGATGACACTTCCACATGCTCTTTCAGTAGGAGCTCTGTTCCTTGAGGTGGAGGCCAACGCAGGCACGCCAACCCAAAGACCGAGTTAATGCCCCAGCCTCATTAACAACACCTGGAGTGTGACTGTGGGGACAGCTGAAATCACACACACCCAAACGCAGGAGTAAGGAGATAGAAAAGTTGTCAAGGGGTGGTGGAAAAGAGCTCATGTCCACGGGCTAAGAGTACCCTCTGCTCTCCCTGCGCCCATCACTGCACTCTCTCCTTTACCTCTCGAAGTTACGCCACTTCCACCCAAAAGCCCCATTTCCATTCCTATCCCAAAACTGCTTCCAAAATCTTTGCGGTGTTCTGCAGAGTTGCTGCGTACCTCTGGGGGTGTTTTGTGCCCGCAGATTTAAAAGGGATAATTCCTAATGGCCGCTGCCCTTGTGAAGTCACCATCCCTGTAAAATGGAACTGACACGTTCTAATGACCTGCTTTTGGGGAAGTTAGAAGTTGCAGGCAGTACTTAGGCAAAGTCATTAAACAGATTAAATGTAACCATGTTTTCTTTTCCCTGTGCCGCACAGTCAACTAAACATTATACCAATTAATTTATTAAAATGAACATATTTCAGTGAATTTGTCCATTTTATATGAAAAGTTAACCAGATTTCAAAGCGTAAGCAGGGCTAATTATCCTCTTAAGAAAATTCTATTTTATTTTTGCTCAGATGTTCAGCACTTCTGGTTTTACTTTGAAATGTTGATCTACCCGGCAAATTAATTTTAAAATATTCATGTCCTAATTAAAATCAATTTGTGTTGCAGTTTGTCATCATGAATTAGCATGTAACTTTATTTTGTCGAAAGAAAAATGCTAATTAATGTTTTCCATTAGAAAAACGTGAAACAAAGATTTCAGTGCTGAATTTCCACCCCCCCCCCCGTGCTGTCTCTTCTCTGGCAGCACGGATGTGACTCCAGCAGCAGCAGCAGCAGCACGTGCGTGCAGGGAGCTTTGTAACCTCTGAAACGGCACGGGGTAACATGGTTGTACTGCGGATTCAAAGCAGCACACAACTAAGCAGCTGTTTTATGAATATATTTCCCAATCATGTAGCAAGATGGATTGATAACAACATTATCGCTGCTAGAACACAGCTGACATCCTATGGGGAATTGCAGAGTCCCACTTCAGAGCTTTTATTGCTAATTAACGTCTCTGACTGTGTCGTACAATCAGACTGGTCCTGAGGAAGGCAGTGTTAGTCCCTGCTCTACAGCTCAGTCTAAAATGTTTGAAGCATTTTGAGAAGTGCTTGCATTTGGGTCTCACAGCTTTACAAGGGAGTCACTGTTGTCAGTCCACAGCTGGGTTACTTAACCTAATGAGAGCAGCCACTGGGGCAGGATAGGCTTTGTAATCCCTCTGTGTTGCCACCCCAGAGGGCTTCACTCTATTTCGCTGGGACAAGAGGGGCTCACGTGGTGGGAACCCCTCTGCTGGCTCTCACTGTGCCAGGCTGAAGCATTTCTTTATCAGGTGTGACCTGTTGCCTTTGTCAGCATCAGTGTTTGGATCACAAATCCTTTCCTGATTCATTAGCATTCTGCACTGCAGCATAAATCAGCTCCTATTTTAAGTAAGGCTTTTGAGAATTGTTTTTCATATGTATAAAAAAATCCAGGCTTCCTATAAGTGATGTTAATATCTCCATCTTAAAGATGCAATAAAAATATTGCACTGAACTGCTCTGGGTAGAGCACTGGAAGTGAATAATTGTGTAGCACATATGAAAACCTGACAGATCTTTTTAGTTTCTGCTCCTTCTGTGATATGAGGCCTTTTCTTTCCTTCTTTCTCTGCGTGTCTCTATATTGTTCTTTTCATTGTGTCCTTATATTGTGTTTAGTTTTATCTCTTTTCAGGTAGAGAACTGTTCTGTTTAGCACATCATTCGAAAGCCAACTTTATCCATTCCTACAGATAAGCCTGCAGCTAGACCACGCACTGTTGTTTTCTGCACCACTCCTAGGTTTCTACCATAGTGAGAGTAGAAGATGGCCCATTGTATAAAAGCAAATGAGTCACAGCTCAGGATTTCAATCTGCTGCTGATTTGCAGTTGGGGTAGATTGAGGTCACCTGCAGAGACTGCATATGAGCAGGAGAGAGGGGCCGCAGTGGTAAACTGGTTGCATAATTCAGGGAGTGCCTTAATCACTTTCTTGACATCACTGTTACTTGTAAGGACAGAAGTCCAGTTCCATTTGTCGCACCCTTTGCAGAGATGGACCGTGTATTTTATCTTGTTTTGAAAATACATCTGTTTTTGTCAGGGAACGCAGCCAATAAGAGCCCTGAAATTAAACTTTTCATTCGTTACTGAGCAGAGCTTTCCATCAACTTTAATGGTAAAGATTTCCAATAATTTGGTGGGAGGCTGGAGGTATACCTGTCTGTTAGTTTTATGTCACCGTGCGTGGGCTGCGACACGATGGTTCTGGAAGAAAAGCAGAGTTTCTTTTCTTCCAACTTCAGCAATTGGCTGTGGGGACCGACAGCTTTGTTCTCCTCTTCCTCTCCCATCCCCGCTCCTTTCAATGTCCTTCAGTAATGATAATCTTCTAACTGTATTAGATTCGTTTTCCAGCAGGCAAATGGATTGCAAGATGACTTTTTCACATTGCTTTTATGCCTGGGAAATAAGCAAGCACAGTGGGTGTGAATGCCTTCTCCTTATTTCCACCAGAAATTTGCCCTCTTGTCTTCAGCAAATAAAGATGTCATAATTACTTTTCTCTCTAATCGCTTAATGTTAAATCCTGTGACTTCCTAATATTCATTAGGAAGCCTTCATTAAACTGTTCTGTATTTCCAG
Seq C2 exon
TGTGTCCCAGTGGAAAATATGGGAAGAACTGTGCTGAGCTCTGCCAGTGCACCGAGAACGGGACGTGCAATCCCATCGATGGGTCGTGCCAGTGCTTTCCAGGCTGGATAGGGAAGGACTGCTCCCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007631:ENSGALT00000012349:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(36.2=37.0)
A:
NA
C2:
PF0005319=Laminin_EGF=PU(67.4=65.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]