BtaINT0091707 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020839 | MEGF6
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr16:50799088-50799452:+
Coord C1 exon
chr16:50799088-50799219
Coord A exon
chr16:50799220-50799323
Coord C2 exon
chr16:50799324-50799452
Length
104 bp
Sequences
Splice sites
5' ss Seq
AACGTGAGT
5' ss Score
9.54
3' ss Seq
GCTGGCCCCTCCCTCCGCAGGGT
3' ss Score
11.62
Exon sequences
Seq C1 exon
CCTGCCCACCTGGCACCTTTGGGGAGCGCTGTGGGCAGCAGTGCCACTGCCCCGGCGAGAACCAGGCCTGCCACCCCGCCTCAGGGACCTGCGCGTGTGCCCCCGGCTACCACGGCGCCGGCTGCCAGCAAC
Seq A exon
GTGAGTGCTGCCTCAGCCGCCCGCCGGCCCACTGGAGTGATGGTGGGAAAGGGGGAGGGGCTTCAGAGCCCCCCACACCTGGCAGCTGGCCCCTCCCTCCGCAG
Seq C2 exon
GGTGCCCACCAGGGCGGTTTGGGCCTGGCTGTGAGCTGCTGTGTGGGTGTCTCAACGGGGGCTCTTGTGACGCGGTCACTGGGGCCTGCCGCTGCCCCGCCGGATTCCTTGGGACTGACTGCAGCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020839:ENSBTAT00000027771:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(34.8=35.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGGCACCTTTGGGGAG
R:
GCAGTCAGTCCCAAGGAATCC
Band lengths:
247-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development