GgaINT0134980 @ galGal3
Intron Retention
Gene
ENSGALG00000001040 | MEGF6
Description
NA
Coordinates
chr21:996974-997313:+
Coord C1 exon
chr21:996974-997105
Coord A exon
chr21:997106-997184
Coord C2 exon
chr21:997185-997313
Length
79 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
ATCATTGCTTTGCTGTGCAGAGT
3' ss Score
6.49
Exon sequences
Seq C1 exon
CCTGTCCTCCCGGCACCTTCGGGGAGCGCTGCGCCCAACGCTGCCGCTGTGTGGGACCCACCCAGGACTGCCACCCCATCAGCGGTGTCTGCGTCTGTGCACCCGGCCGCCATGGGCCTGACTGCGAGCTGG
Seq A exon
GTGAGCCCATAGCTCCAGGTGGATGGACGCCTCGCTCTCACCTCGCTGGGCACCGTGCAATCATTGCTTTGCTGTGCAG
Seq C2 exon
AGTGCCCTGTGGGCTGGTATGGCCCCGGCTGTGAGCGGCCGTGTGAGTGCAAGAATGGGGCGCGGTGTGAGCGCACCACGGGGACGTGCCACTGCCCGGCGGGATACATTGGTGCTGACTGCAGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001040:ENSGALT00000001544:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(34.8=35.6)
A:
NA
C2:
PF079748=EGF_2=WD(100=65.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCAGCGGTGTCTGCGTC
R:
GTCAGCACCAATGTATCCCGC
Band lengths:
175-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]