BtaINT0091709 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020839 | MEGF6
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr16:50800011-50801346:+
Coord C1 exon
chr16:50800011-50800139
Coord A exon
chr16:50800140-50801217
Coord C2 exon
chr16:50801218-50801346
Length
1078 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
3' ss Seq
CATGCCCGCTTCGTCCCTAGGCT
3' ss Score
11.75
Exon sequences
Seq C1 exon
CCTGTCCACACGGCCGCTTTGGCCCTGGCTGTGCCTACGTGTGCGGGTGTGGGCAGGGGGCGGCCTGTGACCCCGTGACCGGCAGCTGCTCCTGTCCGCCTGGGAGGACCGGCGTCCACTGCGAGCACG
Seq A exon
GTGAGAAGCCACTTGCCTGCTGCCTCAGGCACTTCGCATTCATCACTACATTAGCCGTGGGGGGCATTGGTGATAGAGTGAAGATAGAAGTGAAGGTGGTGATAGAGTGATAAATACGAGTCACGGGAGAGCGGGGTCCCTTCTGTTAATCCCCGAGGTGCCCTGAGGATATAAGTGAGGGCTTACTCATGTTGACCGCAATGCCCACTCGGATCATCCGATAGCACCCCATATCTTGCCTTGACCCGTGACCCCAGGACTCAGGCCATCAGTTGACCTCTCCAGTTCCCTGTGGCCAGTGGGGGATGAATAACTTCTTTCCCAGAGCCAGCCCCCACCGCCCAGCAGGAGGGGTCAGGCGACTGCTCCATCTTGAGGATGGAGCCAGCCTCTTGGCTGATGTCCTCCTGGAACGGGGTCCTGCTGGCCCTTCCTCCTGGGCCCAGCAGCTGGGAACCCACAGAGATGGAGGCCCGGAGCACAGGTGATGGTGGGGCAATTGGAATGGCCCCTGGGACCGTCGTGGGGTTTGTGCTCATGATGATAAGCAGGTCCTCAGGCCTTGCCCACACTGCTTGGTCTGACCCCACACCCTGGTAGGTCTGAGCCCTCTGCACCCTCTGGTCCTCTTCAGGGGGCCGGTCACACTCCCTCAGGTCCTGAGTCCTGACTTGAGCCAGGCCACTCCTCACCTCCAGGGGAGAACGGCAGCTAGGGGTCAGAGTCTGAAAGCACCACCTGGAGTGTGGGGCTGCCCAGCCTCCTCCGAACCTGGAGGGTGCCTCCTCCCCAGGAAGACTTCCCTGATCCCCTCCCGCCTGCTGGACAGGCACTCCCATCCTCTGGAGGGCCCTGGTCCCTTTCCTCCTGTGTAACTCTCAGCGCTGGCTCAGTTCTGGCCTCTGAGGAAGATGGATGAACTGGCAGGATGTGGTTGGTGCTGCTTCCTGGCACGTGTATGCCTTGGGAGCGGGGGGAGGAGGAAGTGTTTGTTGAATGACTGTCGGATCACGTGGGAGTGTCCTGGAGCGTGTCTGGCTCTGGACCAGAGCTCTGAGCATGCCCGCTTCGTCCCTAG
Seq C2 exon
GCTGCCCCCAGAATCGGTTTGGTGTGAATTGTGAGCATGCGTGCTCCTGCAGGAATGGGGGCCTGTGTCACGCCACCAACGGCAGCTGTTCCTGTGGCCTGGGCTGGACTGGGCCACACTGCGAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020839:ENSBTAT00000027771:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126612=hEGF=WD(100=29.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCACACGGCCGCTTTG
R:
AGTGTGGCCCAGTCCAGC
Band lengths:
246-1324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development