GgaINT1017740 @ galGal4
Intron Retention
Gene
ENSGALG00000001040 | MEGF6
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr21:1026163-1026443:+
Coord C1 exon
chr21:1026163-1026235
Coord A exon
chr21:1026236-1026314
Coord C2 exon
chr21:1026315-1026443
Length
79 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
CACTGCGCCCTGTCCTGCAGGCT
3' ss Score
8.97
Exon sequences
Seq C1 exon
GGGGCCACGTGCCACCACGTCACCGGGGACTGCCTGTGCCCACCGGGGAGAGTCGGTCCCACTTGTGAGCAAG
Seq A exon
GTAACTGTGAGCTGCAGGGGAAAGGTCCCAGGAGGGAACCCGTTTCCTGCTGTGCCCAGCACTGCGCCCTGTCCTGCAG
Seq C2 exon
GCTGCCAGCCGCAGCAGTACGGGGTGGGCTGCCTTCAGCCTTGCTCCTGCCTGAACGGAGGGCTGTGCAATGCCACCGATGGGTCCTGCAGCTGCGGGCTGGGATGGACTGGGAAATCCTGCGAGTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001040:ENSGALT00000001544:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACCGGGGACTGCCTG
R:
CGCAGGATTTCCCAGTCCATC
Band lengths:
178-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]