BtaINT0091720 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020839 | MEGF6
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr16:50784578-50785703:+
Coord C1 exon
chr16:50784578-50784715
Coord A exon
chr16:50784716-50785583
Coord C2 exon
chr16:50785584-50785703
Length
868 bp
Sequences
Splice sites
5' ss Seq
TCGGTGCGA
5' ss Score
5.53
3' ss Seq
TTGTGGTGTGTGCCCTGCAGACG
3' ss Score
8.91
Exon sequences
Seq C1 exon
GGATCGAGATGGAGATTGTGAACAGCTGTGAGGCAGACAACGGCGGCTGCTCCCACGGCTGCAGCCACAGCAGCGCGGGCCCCGTCTGCACCTGCCCCCATGGCTACGAGCTGGATGAGGACCAGAGGACGTGTATCG
Seq A exon
GTGCGAGCCACCTCCTTCCTGACTGCCGTCCCCCAAGCCAGAGGCTCGCTGCTGCCCTGGGGCAGTGCCCGGGTTTGATGCCGTGAATGGGAACCTCCCTCCTGTTGCCCCCAGTCCTGTTCCCTCAGCCCCGGGAAGGGGTGGGGGTGGTACAAGGGGGCCTGGTGAGAGGCAGCATCGAGACCCCGCCGAGCACCCACCGCCCCATGTCCACCTGCAGCTCTGCTCAGCCGCTTGGTCAACACCCATGTGCTGTGGCACGTGAGCATCCCCTCTGCATCAGCGGGCACTTCCTAGCACCTGCCACTCCCTACCCTGCTCCCACAGCAGGCGGGGTGGCCCTGGGCTGCCACCTGCGTCCTGGTGTGCCGTGTGTGCAGGGCCGGGGACGTACCTGGGTGCCTATGTGATTGTGGGCGAGTATGTGCAACTCACATGCAGGTGTGCATACAGTCATGTGCAAGTGTGTGTGTGCATGTGGTTGCCTGCAGGTAGTTGTGGGTGGGCGTGCGTGTGGTTGTGTGCAGGTGGTTGTGTGCACGTGTGTGTGTGTGGTTGTGTGCAGGTGGTTGTGTGCAGGTGGTTGTGTGCAGGTGTGCACGTGGTGTGTAGGTGTGTTTGTGAGGTGTGCGTGTGGCTGTGTGCAGGTAGTTGTGGGTGGGTGTGCGTGTGGTTGCCTGCAGGATTTTGTGTGCACGTGTGCGTGTGGTTGTGTGCAGGTGGTTGTGTGCAGGTGTGCACGTGGTGTGTAGGTGTGTTTGTGAGGTGTGCGTGTGGCTGTGTGCAGGTGTGTGCACACTACCATGCTGTGGAAGGAGTGCACGTGGGTGGCACTGGTGCCAGCTGGGTTGTGGTGTGTGCCCTGCAG
Seq C2 exon
ACGTCGACGACTGTGCCGCCTCCCCCTGCTGCCAGCAGGTTTGCACCAACAGCCCCGGTGGCTACGAGTGCAGCTGCTATGCTGGCTACCGGCTCAGTGCGGATGGCTGCGGGTGTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020839:ENSBTAT00000027771:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=76.6)
A:
NA
C2:
PF146701=FXa_inhibition=WD(100=85.4),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAGATGGAGATTGTGAACAGC
R:
CTCACACCCGCAGCCATC
Band lengths:
254-1122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development