DreINT0014395 @ danRer10
Intron Retention
Gene
ENSDARG00000074808 | MEGF6 (1 of 2)
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr11:41147549-41148401:-
Coord C1 exon
chr11:41148264-41148401
Coord A exon
chr11:41147672-41148263
Coord C2 exon
chr11:41147549-41147671
Length
592 bp
Sequences
Splice sites
5' ss Seq
TCGGTACAG
5' ss Score
3.7
3' ss Seq
TGTGTATTCTCTCCTGTCAGATA
3' ss Score
10
Exon sequences
Seq C1 exon
GTATTGAGATGGAGATCGTGAACAGCTGTGATCATGATAATGGTGGTTGTTCTCATCACTGTGAACATTCGACCGCTGGTCCGCTGTGCAGCTGTAATGAAGGATATCAGCTGGACCACGACCACAAGACCTGCGTCG
Seq A exon
GTACAGGAGACACTGATCACCATTTCCTGTTCTATACAGTTGAAGTCAGAATCAGTCACCCTCCTGTGAATTTGTTTTTGCAAATTTTTGTTCATGCAAGGCATGTTTCACAGTATTTCCTATAATATTTTTTCTCATTTGTTTTATTTTGGCTAAAATAAAAGCATTTTTTAATTTTTAAAAAAACTTTTTAAGGTCAATATTATAGCTTAAGCTATATTGTTTTTTCAAAGGTCTACAGAACAAACAATCGTTATACAATGACTTGCCTAATTACCTTAACTTTAACTTAATTAACCTAAATGAGCCTTTAAATGTCACTTTAAGCTGTATAGAAGTGTCTTGAAAAATATCTAGTCAAATATTATTTACTGTCATCATGTCATGGCAAAAATAAATTAAATAATTTATTAGAGATTCTTTATTAAAACTTTTATGTTTAGAAATGTGTTGAAGAAATCTTCTCTCCGTTAAATAGAAATTGGGGAAAATTTACAGGGGGGCTAATAATTCAGGAGGGCTAATCATTCTGACTTCAACTGAATGCACAGTAATGCTGTTAGCTGAAGGTGTGTGTATTCTCTCCTGTCAG
Seq C2 exon
ATATAAACGAGTGTGTCGACGGCAGCTCGTGTTGTGAACATGACTGTACGAACTATCCTGGAGGATACGAGTGTTACTGTACAGCCGGATATCGACTGAACACTGACGGATGCAGCTGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074808:ENSDART00000109204:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126622=cEGF=PU(81.8=38.3)
A:
NA
C2:
PF126622=cEGF=PD(13.6=7.1),PF126622=cEGF=PU(83.3=47.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGAGATCGTGAACAGCTGT
R:
CATCACAGCTGCATCCGTCAG
Band lengths:
254-846
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]