RnoINT0081763 @ rn6
Intron Retention
Gene
ENSRNOG00000000156 | LOC100911486
Description
multiple epidermal growth factor-like domains protein 6-like [Source:RGD Symbol;Acc:6492904]
Coordinates
chr5:171554907-171555601:+
Coord C1 exon
chr5:171554907-171555044
Coord A exon
chr5:171555045-171555481
Coord C2 exon
chr5:171555482-171555601
Length
437 bp
Sequences
Splice sites
5' ss Seq
TCGGTGCGA
5' ss Score
5.53
3' ss Seq
CTCCTGCGTGTGCCCCACAGACA
3' ss Score
9.56
Exon sequences
Seq C1 exon
GGATCGAGATGGAGATTGTGAACAGCTGTGAGGCTGGCAACGGTGGGTGCTCCCACGGCTGTAGCCACACCAGCACTGGGCCCCTGTGCACCTGCCCTCGTGGTTACGAGTTGGATGAAGACCAGAAGACCTGTATCG
Seq A exon
GTGCGAGCCGGTTCCTTCCAGGCTGCCCTGCCCCTCCATCCCCAGGGCTTGCTGCTACAGCAAGTCTTGGACTTGTTTGGTGCCATGGCTTGGAAGTTCTCCTCTCTCTGCTGCTCTTGACTGCCTGGGCTTAGCAGGAGCAGCAGGGGAGCTGACAAGAGTCTGCATCACAACTCAGAAGGAGTCTGAGTGCTTGGGTTGGCATGGGGGGAGGGGAGGGGGTAAGGGGGAGGGGGAGAGGTGTCCATGGAACTGTTCCTGTGTGTGGTTCTGTGGCTGTATGCATGACTGTATGCAGTGTGCCAGTGATTGTGTACAGGCTCACACGTGGTCGGGTAGGATCGCGTACAGACACGTACACAAGGGGGCGGGCGTGCCTGAGTGGTTGCTGTGTGGATTGCGGGAGGGTGTATGTGTCTCCTGCGTGTGCCCCACAG
Seq C2 exon
ACATCGACGACTGCGCCAACTCTCCGTGCTGCCAGCAGGCATGTGCCAACACCCCTGGTGGGTATGAGTGCAGCTGTTTCGCTGGCTACCGGCTCAACACGGACGGCTGTGGCTGTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000156:ENSRNOT00000000169:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=76.6)
A:
NA
C2:
PF146701=FXa_inhibition=WD(100=85.4),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAGATGGAGATTGTGAACAGC
R:
CTCACAGCCACAGCCGTC
Band lengths:
254-691
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]