BtaINT0092013 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009458 | METTL2
Description
Bos taurus methyltransferase like 2B (METTL2B), mRNA. [Source:RefSeq mRNA;Acc:NM_001075246]
Coordinates
chr19:47520126-47521939:+
Coord C1 exon
chr19:47520126-47520232
Coord A exon
chr19:47520233-47521873
Coord C2 exon
chr19:47521874-47521939
Length
1641 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTT
5' ss Score
7.64
3' ss Seq
TTTACCACATCACTCTGCAGGTC
3' ss Score
8.63
Exon sequences
Seq C1 exon
GATGCAGAATGCTATCAACAGGCTGAGCAGGCTTCTGAAGCCCGGGGGGATAATGCTTCTGCGAGATTATGGCCGCTATGACATGGCTCAGCTTCGGTTTAAAAAAG
Seq A exon
GTATTTTTCCCCACTATAATCAAAACAATGGCTTTGCCCTCAGAATAGTCTCACAAATTAGTGGAATAAAATAGAGACTCTTGAATTATATAGCTCCATACAGAGAGCCATTTCATACATGATAAGAGTGGTATGTTTTAAGTGTGATATGGCAAAAGATGCCATTAAAAAGTTAAAAGATAAATGACAGATTGAGGACAAATATTTCAGTTAATAGAACAGTAAAGATTTAATATCTATGATGTTCAAATAGGACTGCTGGCAAATTGATAAGGGAAAAGATCAGTGACCCACCCGGAAAACAGATGAGAAGTGTGTTAGAGTTGATTTACTGAAGAGCGTATCCAAATGGCCGAAAACAAAACTTCAAGAAAATGGAAACAGCAAGGAGATACCTATTGCTGGCTGACTCAGAGAGAGCAATGTTCCTCCATGGAAGGCAGAAATAGGAATAGTTGTGGCTTTTTTTTCAAAAGCACCTGGTGTTATCCATTCAATCCAACAATCCTCTGGGGATTTATTCAGGAACCAGCACATAGTATGTATGTAATAAGCAAAACCTTGGAAACAAAGTGACTGCCTCTGCACAGGGTAATGTGTGTTATCACATGGGATGGACCCCATACCACTGGTCTCGTGGAGGGTGGACTTGGCTGTGTGACCAACTGAGAAAAGCATTGTGCGGGTTGGTATTTTACACTTAATCCTGTGTTTAACAGTAGATAGGGAAAAATAAAGCACGGAGAAGGCAATGGCACCCCACTCCAGTACTCTTGCCTGGAAAACCCATGGACGGAGGAGCCTGGTAGGCTGCAGTCCATGGGGTCGCTAAGAGTCGGATACGACTGAGCGACCTCACTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACGGGGGAGCCTGATGGGCTGCCATCTATGGGGTCGCACAGAGTCAGACACGACTGAAGCAACTTAGCAGCAGGGAAAAATAAATAAGATTACTTTGACATTCAAAAGGCGTAGAAGGATTGATTACACATCAGGTTGTTAAACTGAGAAGGTCAGGGGGCTTAGCAGCAGAAGGGGAAGTGTGTCCTTGATAAAAAACAGTTTGTATGGGATCCTATTTATGAGTGTGCATGTGGACACCGTGAAGAGACATGCAAAAGGACAGTCACTGAAATGGGAATAGTGGCTGTCTCAGATTTCCTTAAACTTAGCTATATTCCTTGAATTTTTACTATGTGTTTTTAAAGGGGCAGAAAGCCACTTAAAAGTTGCTTTTGTTTTTAAACAAAGTGTATGTGTTATTTATTTAATGGAGGAAGGGAGAAAACAAGCTATTTTCATCCTGAAGCAGAACTGTAAAATAGGGGGCTGAGAATTACATGTGTTCACTGATACTGAAGTTTGATTATTCTTCTGGAGCTGCTGTTCTCCAAAGCATCATTCCTTTGTAGGAGAGAGACTGCAGATTCCTGCAAAGTACCAGAGTAGCTTAGAAAAGGATCTGTTCTCTGCCCAAGAAATTGGTATCTTGATGCACATTTAATTGGCCGTGAAATTGACAGAAGTGCTTTAAAGTTTCTCTGGTCTTTACCACATCACTCTGCAG
Seq C2 exon
GTCAGTGTCTGTCTGAAAATTTCTATGTAAGAGGCGATGGCACCAGAGTGTACTTCTTCACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009458:ENSBTAT00000012443:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=FE(19.1=100)
A:
NA
C2:
PF134891=Methyltransf_23=FE(11.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development