RnoINT0091771 @ rn6
Intron Retention
Gene
ENSRNOG00000006131 | Mettl2b
Description
methyltransferase like 2B [Source:RGD Symbol;Acc:1310240]
Coordinates
chr10:93360969-93364927:+
Coord C1 exon
chr10:93360969-93361075
Coord A exon
chr10:93361076-93364861
Coord C2 exon
chr10:93364862-93364927
Length
3786 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
TTTTTGTTGTGTAACTGCAGGTC
3' ss Score
8.49
Exon sequences
Seq C1 exon
GATGCAGAAAGCTATCAGCAAGCTAAGCAGACTCCTGAAGCCTGGAGGGGTGATGCTTCTTCGAGACTATGGCCGCTATGACATGGCTCAGCTTCGGTTTAAAAAAG
Seq A exon
GTATGTGAGGGTCTGAAGAGATGAATTGGTTAAGAATCCTGGCTGTCCTTGGAGGGAAGCAGAATTCAGTTTCCAGTATCCACATGGTGAGTCTCAACTGTCTGTAGCTCCAGTTCCAAGGAATCTAATGCCCTCTTCTGGCCTAAACAGGCACTGGGCATGCATGAGGAACAGATACATACATGTAAGCAAAATATCAAAAAAATTATTAAATATTTAAAAGTATGGCCAGTCATGGTAGCATATGACTTTAGTATCAGTACTCAGGAGGCAGAAGCTGATCTCTGAGTTCAAGTCAAGCCTGGTGGTTTACACAGTGAATTCCAGGTCAGCCAGGACTATACAGTACCATATTATCTGTAGAAAGTGTGTGCACGCGTGCGTGCGTGTGTGTGTGTGAAGATGATTGGGGCTGAGGTGCAGTAGCTCATTAGCTCATTTGGTCGAGTGCTGTAATGGTTAGGGTTACAGTTGCTGTGGTAAAACACCGTGATCAAAAGCAACTTAGGGAAGAAAAGGTTTACTTGGCTTACAATTCCACATCATAGCCCATCACTGAAAGAAGTCAGGACAGGAACTCAAGCAGGGCAGAAACTTGGAGGCAGGAGCTGATGCATAAGCCATCAAGAAGTGCTACTTACTGGCTTGCTCAACCTAACCTTATAGATCCTAGGACAACCAGCCCAGGTGACACCACCCCTCCACCCCCACCTGCCACTTCCCTAAAGGCTAGCCTAGAACCTGAATTTTTGGGGGAGTTTTTTTGAGTCAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACGCACTCTGTAGACCAGGTTGGCCTCAAACTCAGAGACCCACCTGCCTCTGCCTTCCTATTGCAAGGATTAAAGGTGCACACCGCCTTGTCAAGCTTGCCTAGACCCTGGTTTTCCAGAGGCGTTTTCTTAATTGAGGCTCCCTCCTCTCAGATGTCTATATAGCTTGTATCAAACTGGCCAGCACGAGTGCCTACCGACTGGGATACATAAAGCCCTGGTTTTGATTCCCCAGATGATATAAAACCAGTTGTGTATACCTATACCTCAGTGCTTAGAAGGTAGAGGCAGGAGAGTAGTGGTTCAGGTCATCTTCAGATACACAGCAAGCCACTCAGGGCTACACGGGACCCTGTCTCAAATAAGTAATTTGTTTTCCAAAGGTATTTTGCCACTTTAGTGAAAATAATCAGTTTACCAAACAGATTAGACATTTAATGCTGGCAGTGGAAAGGTTAGGGGTTGTCTGTCTGTTTGTTAGATATTATCTCTTAAGGAGGAAAAGGGCTGGACAAATGGTTTAGCAGTTAAGAAAACTTGTTCTTTCAGGGGACCTGGATTTGGTCCCTAGCACCCATGTGGCAGTTCTAGGGGGTCACATGCCCTCTTCTCACATCCACAAGTTTCTGTGTGCATGTGGTACCCATACATACAGTCAGGCATGCACTTATGCAAAAATAAAATAATTTTTTTTTTTTATAAAACATGAAAAGGGGCTGGAGAATTGGCTTAAAAGTAGGAGCACTGGCTCGTCCAAAGGACCCAGGTTTGATTCCCAGCACCCACATGGTGGCCAACAGCTGCCTGTAACTCCAGTTCCCAGATTCTGATGCCCAGTTCTGGCCTCCAAGGGTACTGCATACACACTGTATAGACACGTGCGGACAAAACACTCATAGACATAAAAAAGTAAATATTAAAGACATATAAAGTAAATATTAGGGGGGACTGCAATCAGGATGTAAGTTGAATAAATAATTAATGGAAAATAAATATTTTTAAAGGGAAAACATAAAAAGAGAAGCAATTTTTATGAGTCCTAGGCTTTATCAGAAGTTTAAGAAAAGTGAAATGAGCAGGTTAAGGGGCTGGTGAGATGGCTCAGTTGTTTAGAGCACTGGCTGCTCACTCAGGTCCTGAGTTCAATTCCCAGCAACCACATGGCGGCATATGGCCATCTGTAATGGGATCTGATGTTCTCTTCCCGCATGCAGATGTACATTCAGATAGAACATTCATGCATTAAGTTTTTAAAAATTAATAAAATGAGATGAAGAGGTTAGGTACCTCTCAGTGGCAGAACCCTGGCCTGACGTATCGAAGCCTCTGCTGTTCTGGGCTGCAAGAATGGTTTAGGTTAGCTGAAGCCTGGGAGTTTAGCATAGTGGTGTTCCTTCCTGGCATGTGCAGGGCTCTCAGCACTACAAGTTAAGTCAGGTGGCTGAGCAGACATTTCCAGTGTTCATGGCACATGAAGTCTCAATATCTGTGTTTATCACGGGGCTGTCAGGAACTTGATAAGGAGAAGATCCAGGACCCACCCAGAAACGAACAGTTCAGTTTAAATGACCAACCATAAACGCGCAAGGAAGTAAAAGGGAAAAGAGAATTCTTCTCAACCCCATTGCAGCCAGTTCAAGCAAAGAGCTAGATGCCTCCATTTATAACAAAAATACAAATGTCTATGGCCCTTTTTAAGCTCTCTACTATGTCTTTAGTTTATCCGTCTTGGAAGAAACTCTGCCAGCATAAATAGGTATAACAGAACCTTGGATGCTGGGGTGGCCTAATCTAAGGCAGTCCACACAGTTTGCTTTGGAGAGGCTTCTGCTCTGTACTCCTAGGTGAGGAGAGCCACGTGTGGATGATCATTTTAAGCCTGATGGCCAGAATACAAGTTCACATGTTATATGTGGACTGTTAGGACATGTGGGGGTTACATGCAGTTTGTAAGACCGGAGGGATGAGCAGAAGAGATGCTGTCCACAGAAAAACAGTCTGAGTTCTCACGGCTGTGCTTGTGCACCTGAGAAACCAGCATGGGCCAGTTTAGGTAAGAGTCAGTTACACTGATTCTTGTTTTTCTTCCAACGGAATCTGTAGGCTGAGCGGGTGTTTGTGATGGTGCCACCTGGAACTCAGCTGGAATCACATGCAGGACTGGATACTGACATTGTTTTCCCATGGTACTGCTCTGCTGAAGTGCTGTTCCTCTGTAGGAAGTTGCTAGTTCCTTTGAAGTATCACATGTCCCCCAAATGTACATCTGATTTTTTTTTTTGAATGCCTGTTGTTAAAGGGAAGGTGCTTGGTGTCGGGGTGAGAGGAGGGTTGAGATAGAGTCCCACACTGGACAGTTCACAACTTCCCATAACTCACAATTCCAGGGAATCTGACATCCAGGACTCCATGAGCTGCATGGTACATATAAACTCACTCAGGCACAAGCTTATATACAGAAGCTCAAAAAGTAATAAATCCTTATTGTTGTTGTTTTGGGTTTTACTGCTGTGGACAGACACCATGACCAAGGCAACTCTTGTAAGGACAACATTTAATTGGGGCTGGCTTATAGGTTCAGAGGTTCAGTCCATTATCATTGAGGAGGGAGCATGGCAGCATCCAGGCAGGCACAGTGCAGGAGGAGCTGCGAGTTCTACATCTTCATCTGGAGGCTGCTAGAAGACTGACTTCCAGGCAGCTAGGGTTAGGGTCTTAAAGTCCATGTCCACAGTGACACACATACTCCAAGGCCACACTTCATAGTGCCACTCCCTGGGCCAAGCATATGCAACCATCACATTTGGTTTAGTTTTTCAAGATGCAGTTTTTCTGAAACTCTCTGTAGATCAGGCTAGCCTTGAATTCACAGAGACCCGCTTGGCCTCCCAGTGGTAAGGTTAAAGGGTGCACCACCACTGCCTGTCATCCTTTTGTGCTCCAAATGTATTAATATATATCTGTTTTTGTTGTGTAACTGCAG
Seq C2 exon
GTCAGTGTCTGTCTGGAAATTTCTATGTGAGAGGTGATGGCACCAGAGTTTACTTCTTCACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006131:ENSRNOT00000008140:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=FE(19.1=100)
A:
NA
C2:
PF134891=Methyltransf_23=FE(11.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]