GgaINT0143068 @ galGal3
Intron Retention
Gene
ENSGALG00000000396 | METTL2A
Description
NA
Coordinates
chr27:2248702-2249080:+
Coord C1 exon
chr27:2248702-2248808
Coord A exon
chr27:2248809-2249014
Coord C2 exon
chr27:2249015-2249080
Length
206 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTT
5' ss Score
7.64
3' ss Seq
TAAATCGTTCTTGCCTTTAGGTC
3' ss Score
10.4
Exon sequences
Seq C1 exon
GATGCAGTGTGTCATTAACAAACTGAGTCGCCTTCTGAAACCAGGAGGAATGATTTTGTTACGGGATTATGGCCGTTACGACCTAGCCCAGCTTCGGTTCAAGAAAG
Seq A exon
GTATTTTCATTTCCCATGGGGAGCTTTTACAGCTCACTAATAGATTATGCTTCTCTGGAGTAGCGTCTGCTCTGTTTGGGAGGCAGCTCATTAATTCCACTTAAGCACAGCGTGTGCTGGGAGGAGAAGTGCCTCTGTCTTTATATGCAGCGGTTGTTTGTTTTTAAATGATAGCTGGTAACTGTTTAAATCGTTCTTGCCTTTAG
Seq C2 exon
GTCAGAATATGTTTGCTAATTTATATGTGAGGGGTGATGGCTCCAGAGTCGACTTCTTCACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000396:ENSGALT00000000541:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF082427=Methyltransf_12=PD(17.5=48.6),PF118993=DUF3419=FE(38.3=100)
A:
NA
C2:
PF134891=Methyltransf_23=FE(11.5=100),PF118993=DUF3419=FE(22.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGTCATTAACAAACTGAGTCGC
R:
GGGTGAAGAAGTCGACTCTGG
Band lengths:
164-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]