GgaINT1017782 @ galGal4
Intron Retention
Gene
ENSGALG00000000396 | METTL2A
Description
Methyltransferase-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q5ZHP8]
Coordinates
chr27:2342069-2342447:+
Coord C1 exon
chr27:2342069-2342175
Coord A exon
chr27:2342176-2342381
Coord C2 exon
chr27:2342382-2342447
Length
206 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTT
5' ss Score
7.64
3' ss Seq
TAAATCCTTCTTGCCCTTAGGTC
3' ss Score
9.98
Exon sequences
Seq C1 exon
GATGCAGTGTGTCATTAACAAACTGAGTCGCCTTCTGAAACCAGGAGGAATGATTTTGTTACGGGATTATGGCCGTTACGACCTAGCCCAGCTTCGGTTCAAGAAAG
Seq A exon
GTATTTTCATTTCCCATGGGGAGCTTTTACAGCTCACTAATAGATTATGCTTCTCTGGAGTAGCGTCTGCTCTGTTTGGGAGGCAGCTCATTAATTCCACTTAAGCACAGCGTGTGCTGGGAGGAGAAGTGCCTCTGTCTTTATATGCAGCGGTTGTTTGTTTTTAAATGATAGCTGGTAACTGTTTAAATCCTTCTTGCCCTTAG
Seq C2 exon
GTCAGTGTCTGTCTGCTAACTTCTATGTGAGAGGTGATGGCACCAGAGTCTACTTCTTCACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000396:ENSGALT00000000541:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=FE(18.8=100),PF118993=DUF3419=FE(40.4=100)
A:
NA
C2:
PF134891=Methyltransf_23=FE(11.5=100),PF118993=DUF3419=FE(24.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCATTAACAAACTGAGTCGCC
R:
TTGGGTGAAGAAGTAGACTCTGGT
Band lengths:
164-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]