BtaINT0093655 @ bosTau6
Intron Retention
Gene
ENSBTAG00000044074 | MLLT10
Description
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 [Source:HGNC Symbol;Acc:HGNC:16063]
Coordinates
chr13:23227673-23229132:+
Coord C1 exon
chr13:23227673-23228034
Coord A exon
chr13:23228035-23229035
Coord C2 exon
chr13:23229036-23229132
Length
1001 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GAATTTTCATCATTTTTCAGTGC
3' ss Score
8.12
Exon sequences
Seq C1 exon
GACTTAACCTCCAGCGGACAAAGCACCAGCAGCTCATCGGCTCTTTCTACTCCACCTCCTGCCGGGCAGAGTCCAGCTCAGCAGGGCTCAGGCGTTAGCGGAGTTCAGCAGGTCAATGGTGTGACAGTGGGGGCACTGGCTAGTGGAATGCCGACTGTAACATCCACCATTCCTGCCGTGCCTGGAGTGGGTGGAATAATTGGAGCTTTGCCAGGTAACCAACTGGCAATTAATGGCATTGTAGGAGCTTTAAATGGGGTTATTCAGACCCCTGTCACAATATCCCAGAACCCTACCCCCCTCACCCACACAACTGTACCACCTAATGCAACACATCCAATGCCAGCTACACTGACTAACAG
Seq A exon
GTAAGAAACTTACTTAAGTATCTTTGGCAGTTTTTAGAGCAACATGGTACCAAGCTATCCATGCTTTAGTTAGGGATGTTTTAATGTGTCCCTTGTAGATGTGCTCTAAGAAAGTAAAATCCACAAGCTAAATATATTATACCAGGAGCCATTTATTTTTGACACTTTAGTAATTCAGATTAAATACAAAGTTAAATCACTTTGAGAAGCAAAGCATAAGCATTAAATATATTCTGTACTGAAAATTTCAGTCTTGATCTGTAATGTCTGTTTTAAATGCTATTTTTCTTAACCTCATGTATTGAAAATTCTGGAGCAAAGTAATATTGTAATGAAGATCACATATGAATGTTGGTTTCTTAAAATTCAGCTATGTAATTTTGTTAGCTTTGTAATCAAAGATTTTGATATAAGATGAAGGTCAAATATTTATCTTGAATTTCCAGGGAGTGAGACTTGCTGTTTCATTGTGCTGGAATTTCATTTGAATGGCAAAGCCATGTTGTTATTGCACATACTTTTGAGGAATAAATCATTTTAAATGGATTTGTAGTGGATAGTAGTAAACTGTTTCTTCTGGCTGTCTTTTCGTTGGTGCTTAATTTTACTGACAGTTGGGACCATAAAAAAAGTTTAAGTAAAATCAGTTAGTAGTATGTTTGGATTCTTTCTTTGTTTTACTATGTGGGTTAAATTATCCCTGAATGATTGAAAATAAAGTATTACATGTGCATATAAATTTTTATTCCATTGAACAATTTAGTACCTGCTTGGTTTACAATAAAAAGGGAACCAAAACATTTATTGACAATGTGAATTCTTGGTTACCTGTATATGTGCAGAGAGAGAGAAGAAATTTTTACATCGTTGTTTTTCAAAAAGTGTTATGGTTAAAAACTTGACTTGTTAACTTATTAAACATCAAATTGAGAAGTTCTTTCATTTTACATTTAAAAAAAAGAGGTTTACAGTAGAAAGTAAGAATTTTCATCATTTTTCAG
Seq C2 exon
TGCCTCAGGACTAGGATTACTTTCTGACCAGCAAAGACAAATATTTCTTCATCAACAGCAATTCCAGCAGTTGTTAAATTCGCAACAGCTCACACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044074:ENSBTAT00000061645:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.603 A=NA C2=0.273
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAATGGTGTGACAGTGGGG
R:
TGGTGTGAGCTGTTGCGAATT
Band lengths:
348-1349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development