GgaINT0102648 @ galGal4
Intron Retention
Gene
ENSGALG00000007928 | MLLT10
Description
myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10 [Source:HGNC Symbol;Acc:HGNC:16063]
Coordinates
chr2:17806376-17812709:-
Coord C1 exon
chr2:17812348-17812709
Coord A exon
chr2:17806479-17812347
Coord C2 exon
chr2:17806376-17806478
Length
5869 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CACCCTGTCATACCCTGCAGTGC
3' ss Score
8.67
Exon sequences
Seq C1 exon
GAGATAACCTCCAGCGGACAAAGCACCAGCAGTTCATCAGCTCTTTCCACTCCACCACCTGCTGGGCAGAGTCCAGCTCAGCAAGGCTCAGGAGTCACGGGAGTTCAACAGGTCAATGGTGTGACAGTGGGGGCACTAGCTAGTGGTATGCAGACTGTAACCTCCACCATTCCTGCAGTGCCTGGTGTGGGTGGAATAATTGGAGCGCTGCCAGCCAGCCAGCTGGCAATCAATGGAATTGTAGGGGCTTTAAATGGGGTAATTCAGACCCCAGCAACAATATCACAGAACCCTTCTCCTCTCACTCATGCAACCGTGCCACCCAATGCAACGCATCCTCTGCCAACTACATTAAACAACAG
Seq A exon
GTAAGAATTTGCTGATTTATCTTTTTCTTGATAGTGTCTCCTGTTCTTCAGTTTAGCTTTATTTTTTTACTGTCTCTGTAAAAGAAAGGTACGTTTTCTTCTTCAGCCTGCAGTTGTCAAACTGATTTATGAAAGAAAGTAAGCAGAAAGGCGAAGCATGAATAGTCACGTTAAAGATGTTTTCTGTTTAGCTTTTGTGAATCATCGTTATGTCCTTCTCTTTCTGTTTTTTTAATAGTCACGTTCTAAAACAAATGCAATTATGCAAATGTGTTTCAGATCTATTTTTAGTTCAGAAAACAATATTCTTTGTCTTGCCAGTTCGTCTTCCAGGATTCAAGTAGCACTTGGAGAGCTACCGTTTGTTGCAGTTGTGGGGGGTGGAGGGGAGGGAGAAGGGGATTAGTATACGGTCTTGTAGTTAGTGAGGGAATAGGCACAACGAACCATGCATGCAGCTGCATGGGGTTTTTGGTTTTTGGTGTCTGTCTCCAAATTAGTTTTTTCAAGTCATTTTCTTAAAGATTTTTAAATGTGTAAAAAGGTCTGTGTCTGAGTATTCGTGACAACTCTTCTGCTAAAAGCAGACAAAACTGCTGCTTGAGATGCAAGGTAAATGGGTAACAAAAAGAGAGAGCTGCTTTCCAGGAAGGCTGTGGGCTGCTTGGTCTGGAAGTGTTTTGGGGTAGAGCAGAGCCAGGGATAACTGATTCATGGAACTCCTGATAACTCCTGCTTCCCTTCCCCCCATCCCTTGCACTGCCTTTGCTTAGGAAGGAGAAATACGTCTATCTGTAGAAAAAATGCCTGCAAATAGGGAGTGAATGACTTGTCTTTGAGTTTATTTTTGGAGGTCATGTTGGATTACCCCCCAAAAAAGGGAACGTGAAGGGAATGTGATTGGAACGGTGTAAGGGATTCCTGCTTCTGTAGCTTCTTTTTCTGGTTTCTTTCCTCACTGTTCCTTCGGCAGTTTGTGAATGTTCTTGTACAGTGTTGCTGCCTGCTGTTGCTTCAGTAGGCTTGTAAAACCTGATCCTTCTGTGTGTATTTATGTGCTACGGTATTTTTACTGAGGTGATTGTGGGTTGGTTTGTTTTTTTTTTTTTAGTTTACGTTGTATACGAGCATAGCATTTTGTAGATTAAACAGCAGGCATTGCCTTAAAGAGAAGGTATTTTCTTTTTATTTTTTTTTCTCTCTCTTGTGTATCAGAGATCTTGGAAGAACACAGGAATTTTCATTTACCTTCCCCAGAAGTGTGAGGACTCCCTTGTAGTGAGAAAGTCCCAGCGAAGTCAGTAATACTGACAAGTTGTATCATGCTTTCCGCTTGCAGGTAGTGCCAGGACACACTGGTCATGCTGGTGTTGTCTCATATGCTTTTTGTTAATACAAAGATAATTTATTTCATTCGATAGTGCAGAAGTTATTGTGTCTCTCTTACATCCACCATAAGTGTTGTCCCCATTGAGCACGTATGTATCCTCAGCATCACTGCTCTGGTTCAGCAAGGTGCTGCAGCTGGGTCCTGTTGGTCAGCTCTCACCCCAACTTCTGTCATAGTCTGGAATATTCCCGTGATTCCTTATTCTTGCTGCAACAAGTTTGTGTTGTGTAGTTCTGTCAGTGTTTCCATGCCTCCGTTTCTCTTGTCAGCATTTTGATTTCTGTGTTTCTCCTCTAACATGATCTGTCTGTGTTGCTCCCTTATTAATTTTACTGCAGTTTTTACACAGCTCTCTGCTTTTTTTGCTGGGCCGCTATTTGTGAGGTGTTGCTGTAATGACCTCCCATTTTCTATGAGTTTTCACTATTTCTGCTTTTGTATATGGTGGAAAAAAGTTGAGGCCAAGCAAGCACCAAGGCTTGGTAGGGCTAGAATGATTTCAGTAGTGATACCTGCAGTCCTTGTTCCTGTCCCTTCAGCTGTACATTTGACAACGTTCTTGAAAAAATGTGAAAAAAGAACCTTTTTATTTTTTAAACTAAAACTAAGTCATGAGGGGATTCTGGGATGGCTTTGGATGAATTAAAAATGGATTAAAAAATGTCTATCAGCATTTTCCATTGGCTGAGGTCACTGTGAAATGACATGGGACAGCATTTGTTCCTCCTACCCCGGAGGCCGGCGCTGTTTCAGTGGCAGGGAGAGCTGACTGTTGGTCAGTGCTAAATTCCTCTCTGTATCACTGCTCTTTGAACTGCGTGAGTGGGAGGGGTAAACTGTCAAAGGCACAGGCAGGCCTGAAGGGCTGCTGCCATGCTGTTTGCAGCTCTTTGAGTGTGGTTGGATGCTGTGGTGGCAAACAGTATCGGAGCTGGTTTAAATCACTGCTCCCAAGGTGATGGAAACTGAGAACTCAATCCAACTTTCTAACTTTTTTTTGGTATTGTTCTATAATTAAAAGACCTCCCAGATGTTCCTGTGCACTGCTACTTATGGTAACTTCCCCAGCTTCAGAAATCTGCTCAGTTTTATGTGAGAAACTATACGTATTGTTCTTACTCACATGAGCTCTCTGTTAACTGTGGGACATGGGGAAGTGAGAAAGCACTGATTTACATGCTGCTGTTTGAGAAAGTTTCAAATTGTAGGTAAAAACCTACGTTCATTCAGTAGAGAAAAATACTCAGCCTTTCTCTGGGGGGAAATAGCTTAATGGAGATTGCATGCTACCAGGAGATTAAGTGATTTGAGGAAGAAGATAGGGCTGTTTCTTGACATGCTAGCGATCTGAGAAGGCTGGAGGACAGTGAGTTTCAGACTGATCACAGACCTTTCAGCGAGGAGCAAGAGAAGCAAAATTTACGTTCCAGACTGATCTGCTTCGGAGAAAGGTCTGTGGTGAAATGCAGTGAGCTGCCTCTTCCAGGATGCTCAGGAGCCACACAGTTGTGTCTTCTGCAGTGAGGTTTTGTATCTGGATGTGTCCCAGCTGCTGCTTGTGGGTACTTCTCTTCAGGTGCCTCTGTAGAGCAGGAAGGGAAGGCAGAATGGAGGAAGGATGGCAGCAGCTGGGAAAAAAGAAGTGCTAAGGTAAAGCAGAAAGGGAAAAAAAATGATTTTTTTTAACAGTGGGGGAAAAAAAACCCAGCAGAGAAGACTTATTCTAGTATAGGAAAAGTGAGGTAAAAAGAGGAAAATAATGATCATAGTAGCCAAGCTGAAGATAGTTATTTTTTTGCTGCTGTTACAAACATTTTTGCTACAGTTGAATTTAAGACTGAGTGAAATGATTTCCAATAATTGATGTTGCCATTTGGAAGACAAACACACGTGGGGGAAAACAGTCGTGCCTTATTCCTGTTAGATGGTGTGCTTTCTTTTTGCTGTCGCAGCCAGGAGGGAAATCTGAGAGTTTCCCTGGAGAGGTGAAAATAATCTAATAAGCATAGCTTGAATTACTGGGAAATAAATAGAGCACCAAATGGTCTCCACCATTATGTCACCTTAAATCCCCGGCATGTCTGCACCTTGAACGTTGTGTACACTTCTGATTGTACAGCTTCTTGAAAGGATACAGAACGTCTGTGGAGCTGAGGTTAATTGGAGGCAGAAGGATCTACAGAGCACCCAAGATCAGGAGAACGGACTCCTTGGCTTGGGGAGAAGATCATTGCAGGAGACCTTGAGAACTTGGAGAGAGTAACGAATGTTGCGATGGTGACTGCTGGAAATGTCATGCAGTCCAGTGTTTCCCACAGCTCTGAGGTCATCCAGTGAAACATGAAGCAAAGTTGATTTGTCACCTGCCCTGTTCCAGCAATAGGGAAGGCTATGCAACTGCTATTTCCATTTTGGCTTGTTAGCTCCAAGTAAAAGGCAGAAACGTCAAGGAGCAGGGCTGCAGTGTGCTAGCTGCTGTGGAGAGTCAAGACAGAAAGTGTGCCCTGAAGACTTAGTCACAGTAACCTAATTGTGCAGATTCATGGCTGATTTAATTTCTTACTGCTGATCACAACCAGCAATCCTCTTGTCCTGTTGGTCATCCTGCACACAGCTTCATGCTGGTACCAGTGCTTGTGCATTCACACAGTAACCTCCTCCACGGTAACAGATGATCTTGCAGCGCATTTTGTGTTCCCTTAGGTTTCAGCTTGGTACCCATGAGATTCAGCTCATTGTGCAAGAGCCAGGGCAAGGGGAGGGGACCACAACATAGAGCTGAAAGGGAAATACTTAGCCTTTCAGCAGCAGGATAAGCTTAGGAAGATCAGCTTAAACTGATCACAAAACTGCACCTCAGTAATTTGATGGGTGTTTTAACCTAGTAAAAACTAATGCTGGTACCAGAAGAATAAGTCCAACTGTCTCCCTGGTTGTCTGTTCCAAAACCACCGTCATGCTGCTGGTCCCACAGTGAACTGGCACAGCTGCAGAAACCCTTTACTTCCAGAGCAGTTGTCAGCCGGATCAGTTCCCTACCTGATTTCCTGCAGAGCTGCAAAAAGTCTTATAGGAGCAGAGGGAGGAATGGGAGCTATGTCACAGCCAGGTGCAGAGGCTGCCAGCTTCATTCCAAGGCAGCATCAGTTGATGCACTTCAGTGCTGAATGTGCTTGCTAAATTACAGACAAGGTGTAGGGAACAGTGATAGATTTGAATACAGTAAGAAATGAGAATTAAAAAGAAACCTGGACAAAGTAAATCTTAGCATCTGTGCCTTTAAAAACAAACAAGTGTATGTGCACACACACAGCTTTATTGACTATTCTGTGGGTACCTAATAATGTTTTCAAAGAGGTTTGGAAGGTGATGAATTTGATTAGTGTAGGTTCATATGAGGATGCACTGGAGCCTGAGTGGAAGAGAGACAGCTTACAGTACTACTGAAACGTGTATACATCCTAAGGCAATCCTGTAGAGCCTGTGGCTTTGGAACAAGTGTTTGGCAGTTCTGCACCAGCATGGGATGGACAGCTCCATGCTGGCACTGGTTGGCTGTGGTTGTTTTCACCGCAGTTTAGGAGGTTACCATGGCCAGCTGCCTGCTCTGCCTCCCTCTGCAGCACAGCAGCAACAGCAGACTGAAGGAGATGCCTTCTGTGTCAGGCTGCCATTGGCAGTTTCTGTCCTCTGCCATTGTGGAGGCATTACCTTTGGTAAGGGGCAAAGTGCTGTGTGCTCCAGCGTGCTCAGAGCGGTTGGCTCAGCTCGTTTGTTGAAGTTGTACTCGGCAAAATGTTGCCTGAGAATACCACACAATAGCCAGCACTTAATGATTTGAGTACTAATCAAATCGATGATACGGCTTGCTACGTGGTAGACAGCATGTTTAGAAAAAGTAGAAGATTGCATTAGAAGAGGCGGATTGAGAAGCAGCTTGAGGGATTTGAATTTGATGAGAGTAGGTCAAAGAACTGGGATAGGAGAAAGGGCTTTGCTCTGGTATGACAGATGTGAGCCTGGCAATCGTTCCTTCAGCTGGGAAACAAATACCAGTTTTAGTGACAGACGTACAACTTTTGGTAACAGGTATGGAAGTACTAAAGGCTGGCAAGAGCTGGCATAGGAAGGCTGTGTTCCAGCTGATTTGAAAAATGGTAGTTAGCATCCAGGTTTAAAATAATATGCAGATAGTAGTGCTAGGGCTGCCTACACCTACTGAGCTGCCTGACTTACAGGTGAGGTGTTGCTGTTGCTCAAAATAAATGAGAAGAAAAGGTACATTAACTAGATTGATGGTGTCTGAGTACGTATCAGAAATGCAAATAATCAGGATTTAATATTGGACATTATGGAGTCAAAATGCTAAATAGGAACTGTCTATTTGTGTAAAGATTTTCTTTGTTTCAATGGAATGCTGAAGTGAAAAGTTCCCAAACTTTCATATAAACTGCAGTATCACCCTGTCATACCCTGCAG
Seq C2 exon
TGCCTCAGGACTGGGATTACTTCCTGACCAACAGAGACAACTTCTACTCCATCAACAGCACCAGCAATTCCAGCAATTACTAAGTACTCAGCAACTCACATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007928:ENSGALT00000012873:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.587 A=NA C2=0.371
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]