RnoINT0092927 @ rn6
Intron Retention
Gene
ENSRNOG00000022249 | Mllt10
Description
MLLT10, histone lysine methyltransferase DOT1L cofactor [Source:RGD Symbol;Acc:1310874]
Coordinates
chr17:84972845-84973947:+
Coord C1 exon
chr17:84972845-84973209
Coord A exon
chr17:84973210-84973850
Coord C2 exon
chr17:84973851-84973947
Length
641 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CGGCTGTGCTGGTTTTTCAGTGC
3' ss Score
7.52
Exon sequences
Seq C1 exon
GACCTGACTTCCAGTGGGCAAAGCACCAGCAGCTCTTCTGCTCTTTCCACTCCCCCGCCTGCTGGGCAGAGTCCAGCCCAGCAGGGCTCTGGAGTTAGTGGGGTTCAGCAGGTGAACGGCGTGACAGTGGGGCCACTAGCTAGTGGAATGCAGACTGTCACATCCACCATTCCTGCTGTGTCTGCAGTGGGTGGAATAATTGGAGCTTTGCCAGGTAACCAGCTGGCAATCAATGGCATTGTAGGAGCGTTAAATGGTGTTATTCAGACGCCGGTCACAATATCCCAGAACCCTGCCCCGCTCACCCACACCAGTGTGCCACCTAATGCAGCACATCCCATGCCAGCCGCCGCCCTGACTAACAG
Seq A exon
GTAAGACACTGAGCTCGGTATGCTGTTGTCATTGCCGCCTCCTCCTCCTCCTCCTCCTTCTTGTTTTTGTTTTTCATGCAACATGTTATCAGTGTTGTCCTTATTTTGGGTTAGGCTTCTTAAATGTATTTTGCAGATGTTCTCTAGGAAAAATTAAGTGCTAGCTACTTAATGAATGTTAGGCTTGTTTTTTAAAATGATGTAATTCAATTAAAGATTAATTTCAGTATCATATTAAATATATTGTGTTGAATTGAATATATTGTCCTGATCTGGAATATATATCTTAAAATGTTGCTTCTCCTTATTACATAAAATTATACTAAATTTTAAAAAGTTGGTTTTTTTTTTTTTTTTTTTTGTGGCAGTCACATGTACATTTTAACAGCAGTTTTGATACTTCTCTAACATAGATTTCGATGACATGATGGACTGATGAATTCTTATGTTTGTTTAACCTAACTTGTTGACTGAGTTTCTGTCGCTGACAGTCAAGTCTGCGTATATAAGGAGAGGGAATGATTTGAACATAATGAAGTACTGTAGTTCAGGCAGTTTGCTAGTTCCTGGTGAGGAGGCTGCCGTCGTGCTGCCCTCCCTGAGGGGGCACAGGAGACATCACGGCTGTGCTGGTTTTTCAG
Seq C2 exon
TGCCTCGGGCCTGGGGCTGCTGTCGGACCAGCAGCGACAGATGTTCCTCCAGCAGCAGCAGTTCCAGCAGCTCTTGAACTCCCAGCAGCTCACGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022249:ENSRNOT00000034157:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.615 A=NA C2=0.379
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGTGGGGTTCAGCAGGTGAA
R:
CTGGGAGTTCAAGAGCTGCTG
Band lengths:
355-996
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]