BtaINT0094530 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003922 | MPHOSPH8
Description
M-phase phosphoprotein 8 [Source:HGNC Symbol;Acc:HGNC:29810]
Coordinates
chr12:36608692-36609720:-
Coord C1 exon
chr12:36609593-36609720
Coord A exon
chr12:36608776-36609592
Coord C2 exon
chr12:36608692-36608775
Length
817 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
TCATTTGCTCTCTTCCCCAGGAC
3' ss Score
12.13
Exon sequences
Seq C1 exon
GCTCTGGCGTCCTGCTGTTTATCTTCCATGCAAACTTTCTGGGTAAAGAGGTCATTGCTCGCCTCTGTGGACCATGTAGTGTACAAGCTGTTGTTTTAAATGATAAATTTCAACTTCCTGTTTTTCTG
Seq A exon
GTAAGTCTCTGTAGTTCATTACTGATGAGTACATTCTTCTAATCAAAAGCAGGGATGACCTATAAATTCTTCTATTAATCGCAGTTTTTGGAAATGGCAATAACCCAATAATCACTGTTTTAAAATTCTCGGTCTAGAAACTAATTTTAAATATGCCTTTAAATGCATTATAATTACAAATGTTCACTTAAAATTCAAAAAGAAAAGCATGCTGTTGATGTTTCAAAAAATCCCAGTGCAAACACTGTGCTGTTATATAGTGACCATTTTACTCTAATTTTTTTAAATTAAAAATGCCCTTGAAGATGTTCCCTGGTGGCTCCGACAGTAAAGCTGCCCAGAATGCAGGAGACCCGGGTTCAATCCCTGGTCAGGAAGATCCCCTGGAGAAGGAAATGGCAACCCACTCCAGTACTCTTACCTAGAAAATCCCATGGATGGAGGAGCCTGGTGGGTACAGTCCATGGGGTTGCAAAGAGTTGGACACGACTGAGCGACTTCACTTTCACTTGCCATATACAAAAGTCTGTCCTTAGGCTGAATTAAAATTAACTGGTTATGAAGATTTTTAATACTCATGTTATATATATATGTCTGGATACATATTAATGAAGGATTTATCTCTATATTGCTTTTCCAGATGAAGGTATCTAAGTCAAGGGAAAAGTAATCACAGCATGTTGCCTTATAAAGAAACACAAACAAAATGTATTTTCTTCTGTGTCATTAGAGTCTAAAGATGTCTGGAGTCCGGCTGTTACTAGATAGAGATGGCTGTCTACAAAAATGCTCATCTTTCATTTGCTCTCTTCCCCAG
Seq C2 exon
GACAGTCATTTTGTTTACTCATTCAGCCCTGTGGCAGGCCTCAATAAAATGTTCATAAGGCTGACAGAAGCACCTTCTGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003922:ENSBTAT00000061268:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCGTCCTGCTGTTTATCT
R:
GAAGGTGCTTCTGTCAGCCTT
Band lengths:
202-1019
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development