GgaINT0112897 @ galGal3
Intron Retention
Gene
ENSGALG00000017145 | MPHOSPH8
Description
NA
Coordinates
chr1:183528588-183529508:-
Coord C1 exon
chr1:183529381-183529508
Coord A exon
chr1:183528672-183529380
Coord C2 exon
chr1:183528588-183528671
Length
709 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAAT
5' ss Score
4.94
3' ss Seq
CAATTCTCTTTTCCTTTTAGGAC
3' ss Score
11.44
Exon sequences
Seq C1 exon
GATCTGGAATTCTTCTCTTTATTTTCCATGCAAATTTCTTTGGTAAAGAAGTTGTTGCTCGGCTCTGTGGACCATGCAGTGTACAAGCTGTGGTTTTAAATGACAAATTCCAGCTCCCTGTATTTTTG
Seq A exon
GTAAATCTTTTTCATATGACTACTTGACTGTAAAACTGTCTGCAGAACAGCCTGGGAGATGTTAGAGCCTTGATCGGGATTTTGAGTATTGCAGTGGTGTTATTTGGTGCAGATGGTTCTTCTTGTTTTTTAATTTTGAAATGAAACTTAATTTTCTTTTGCATATGGAGGAGAGTGCAAACCCTGTAGGCAGTAGATTCCATAGAGAGTTTCGACTTAAATAAAAGGCAGGGCTGCAGCCTTGGGCCCCCTGCTTTGTGTGTCCCTGCTGGAGCCCAGGTTGGGCCAAGGGGAGGCAGAGGGCCCTGCTATCCTGTGAAAGAATGATGCCAGAGCTGAGGCTTAGGGCAGAGAGGTGAAAATTCGGCATCTGCAGGCGTATCCTTTCTCCAGCTCACCTTGTTTCTCCACCTTTTAACGCAAATTCTTTAGTATAATCACTTGAATGACCTTCCTCATTTGTGAGTCATGTAAATTTATTGTTTTTTCTATTAAGTGTATCACTGTGCACACATTTATGTCCTCTTGTTTCCATTGTGATTGCAGATTGCACTAAAGGTTCTCTGCAATGTACACAACTCTCAAAAAAAAATATATATATATATATATATCTGCCCAAAAACAACCATAGTTTGTCATATTTTTTGACTCACACGGCACTTTGGACCATATCCTGCCATTAACTTAGTCAATTCTCTTTTCCTTTTAG
Seq C2 exon
GACAGTCACTTTATTTATTCCTTCAGCCCAACTGCAGGCCTTAACAAGCTTTTTATCCGGCTAGCAGAAGCTCCTACAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017145:ENSGALT00000027690:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATTCTTCTCTTTATTTTCCATGC
R:
TCTGCTAGCCGGATAAAAAGCT
Band lengths:
191-900
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]