GgaEX0025512 @ galGal3
Exon Skipping
Gene
ENSGALG00000017145 | MPHOSPH8
Description
NA
Coordinates
chr1:183528588-183530443:-
Coord C1 exon
chr1:183530289-183530443
Coord A exon
chr1:183529381-183529508
Coord C2 exon
chr1:183528588-183528671
Length
128 bp
Sequences
Splice sites
3' ss Seq
TGAATTGCCTTCCCTTCTAGGAT
3' ss Score
11.39
5' ss Seq
TTGGTAAAT
5' ss Score
4.94
Exon sequences
Seq C1 exon
ACTCTCAAGAGTAGCAGAAGATACCATCAGGGACTATTTTGAAGCTCGCCTTGTTTTGCTGGAGCCAGTCTTCCCAATTGCTTGTCACCGTCTCTGCGAAGGGCCAGACTTCTCCACAGACTTCAACTATAAACCCCCACAGAATGTGCCAGAAG
Seq A exon
GATCTGGAATTCTTCTCTTTATTTTCCATGCAAATTTCTTTGGTAAAGAAGTTGTTGCTCGGCTCTGTGGACCATGCAGTGTACAAGCTGTGGTTTTAAATGACAAATTCCAGCTCCCTGTATTTTTG
Seq C2 exon
GACAGTCACTTTATTTATTCCTTCAGCCCAACTGCAGGCCTTAACAAGCTTTTTATCCGGCTAGCAGAAGCTCCTACAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017145-'18-22,'18-20,20-22
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(5.4=9.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTAGCAGAAGATACCATCAGGG
R:
GCTTCTGCTAGCCGGATAAAA
Band lengths:
218-346
Functional annotations
There are 0 annotated functions for this event