DreEX6036009 @ danRer10
Exon Skipping
Gene
ENSDARG00000005576 | mphosph8
Description
M-phase phosphoprotein 8 [Source:ZFIN;Acc:ZDB-GENE-050309-191]
Coordinates
chr9:21657553-21659589:-
Coord C1 exon
chr9:21659432-21659589
Coord A exon
chr9:21657738-21657862
Coord C2 exon
chr9:21657553-21657636
Length
125 bp
Sequences
Splice sites
3' ss Seq
CATTGTGTTATATGTCTCAGGTT
3' ss Score
8.07
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
GTTATCAACAGTAGCGGAGGAGACAATCAGAGCTTATTTTGAAACCCGACTGGCTCTGCTGGAACCTGTATTTCCTTTGGCTTGCCACAGATTGTGTGAGGGACCAGACTTTTCACTAGAGTTCAATTACAAACCCCCACAACACGCACCAGGAGAAG
Seq A exon
GTTCTGGAATCCTACTCTTTATCTTCCATGCAAACTTCCTCAATGAAATCACAGCTAGACTCTGCGGGCCCTGTAGTGTTCATGCTGTGGTACTGAATGACAAATTTCAGCTGCCCATCTTCTTG
Seq C2 exon
GACAGCCATTTCATTTACTCTTTCAGCCCTGTTCAAGGAGCCAACAAAATGTTCATCCGTCTGGCAGAGTCCCCCACAGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005576-'14-15,'14-13,16-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(4.7=7.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTATCAACAGTAGCGGAGGAGAC
R:
CTTAGCTGTGGGGGACTCTGC
Band lengths:
242-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]