BtaEX0022745 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003922 | MPHOSPH8
Description
M-phase phosphoprotein 8 [Source:HGNC Symbol;Acc:HGNC:29810]
Coordinates
chr12:36608692-36611394:-
Coord C1 exon
chr12:36611240-36611394
Coord A exon
chr12:36609593-36609720
Coord C2 exon
chr12:36608692-36608775
Length
128 bp
Sequences
Splice sites
3' ss Seq
TTTACATCTCCTCGATTCAGGCT
3' ss Score
8
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
ACTTTCGAGAGTAGCTGAAGAAACTATCAAGGATTACTTTGAAGCACGTCTTGCGCTACTGGAACCAGTCTTCCCAATAGCGTGCCATCGCCTCTGTGAGGGGCCAGATTTCTCAATGGATTTCAATTACAGACCCCCACAGACTATACCAGAAG
Seq A exon
GCTCTGGCGTCCTGCTGTTTATCTTCCATGCAAACTTTCTGGGTAAAGAGGTCATTGCTCGCCTCTGTGGACCATGTAGTGTACAAGCTGTTGTTTTAAATGATAAATTTCAACTTCCTGTTTTTCTG
Seq C2 exon
GACAGTCATTTTGTTTACTCATTCAGCCCTGTGGCAGGCCTCAATAAAATGTTCATAAGGCTGACAGAAGCACCTTCTGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003922_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(5.4=9.4)
A:
NO
C2:
NO
Main Skipping Isoform:
ENSBTAT00000061268fB4390
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTCGAGAGTAGCTGAAGAAACT
R:
GAAGGTGCTTCTGTCAGCCTT
Band lengths:
232-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development