HsaEX0039916 @ hg38
Exon Skipping
Gene
ENSG00000196199 | MPHOSPH8
Description
M-phase phosphoprotein 8 [Source:HGNC Symbol;Acc:HGNC:29810]
Coordinates
chr13:19668377-19671289:+
Coord C1 exon
chr13:19668377-19668531
Coord A exon
chr13:19670236-19670363
Coord C2 exon
chr13:19671206-19671289
Length
128 bp
Sequences
Splice sites
3' ss Seq
CACACATCTCCCATTTTCAGGCT
3' ss Score
9.67
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
ACTTTCAAGAGTAGCAGAAGAGACAATAAAGGATTACTTTGAAGCTCGCCTTGCTCTGCTAGAACCAGTTTTTCCAATCGCATGTCATCGACTCTGTGAGGGTCCAGATTTTTCAACAGATTTCAATTACAAACCCCCACAGAACATACCAGAAG
Seq A exon
GCTCTGGCATCCTGCTGTTTATCTTCCATGCAAACTTTTTGGGTAAAGAAGTTATTGCTCGGCTCTGTGGACCGTGTAGTGTACAAGCTGTAGTTCTGAATGATAAATTTCAGCTTCCTGTTTTTCTG
Seq C2 exon
GACAGTCATTTTGTTTACTCATTCAGCCCTGTTGCAGGTCCCAATAAACTCTTCATAAGGTTGACAGAAGCACCCTCTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196199-'33-37,'33-33,35-37
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000361479fB20123
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTCAAGAGTAGCAGAAGAGACA
R:
CAGAGGGTGCTTCTGTCAACC
Band lengths:
234-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development