GgaEX0025512 @ galGal4
Exon Skipping
Gene
ENSGALG00000017145 | MPHOSPH8
Description
M-phase phosphoprotein 8 [Source:RefSeq peptide;Acc:NP_001164636]
Coordinates
chr1:178467723-178471201:-
Coord C1 exon
chr1:178471047-178471201
Coord A exon
chr1:178470139-178470266
Coord C2 exon
chr1:178467723-178469061
Length
128 bp
Sequences
Splice sites
3' ss Seq
TGAATTGCCTTCCCTTCTAGGAT
3' ss Score
11.39
5' ss Seq
TTGGTAAAT
5' ss Score
4.94
Exon sequences
Seq C1 exon
ACTCTCAAGAGTAGCAGAAGATACCATCAGGGACTATTTTGAAGCTCGCCTTGTTTTGCTGGAGCCAGTCTTCCCAATTGCTTGTCACCGTCTCTGCGAAGGGCCAGACTTCTCCACAGACTTCAACTATAAACCCCCACAGAATGTGCCAGAAG
Seq A exon
GATCTGGAATTCTTCTCTTTATTTTCCATGCAAATTTCTTTGGTAAAGAAGTTGTTGCTCGGCTCTGTGGACCATGCAGTGTACAAGCTGTGGTTTTAAATGACAAATTCCAGCTCCCTGTATTTTTG
Seq C2 exon
GTGAAGCTGCTAATAGGAGCATACAGAGTGCAGCTGCAGTGACCTCACAGTTGCGAGCCCGTTGAGGGGACTGACACCTTTCGGATATACTTCTGATTCCTCCGTTTAGAGACTGACAAAGCAGTTTGGAACTTTTTGGCACCACACCCTTAGTCCCACAAGTTCCCATCCCCATGTTGTTTGTTGGCAGTCATACAGAAAAGTACATGTTGGAGAGCAGCCAAATATGCATTGCTGGTTGGGACAGGGTTGTCAGCTCTTTTTTGATTTGTACAGACATAGATGTAAGTATTTGTGCCAATACATACAATGCTGTCTTTCTTTAACTTGTTGAGTCCAGACTGCATATTTCAGCTTTTCCACAATGTGGAACAGTGCATATAAGAACTATTTAAGGTAATTAAGTAAAATGTCTTTTTTTTAATAGAAGGATCTTTTCCATTTGTAAACTACAATTTTCTACTTACTCAAATAACTGTAATGTTTCAGTGTAAAATGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017145_MULTIEX1-4/5=3-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(5.4=9.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCAATTGCTTGTCACCGTC
R:
TTGTGGGACTAAGGGTGTGGT
Band lengths:
245-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]